Analysis of plant gene expression during passion fruit–Xanthomonas axonopodisinteraction implicates lipoxygenase 2 in host defence

Abstract Passiflora edulisis the major species of passionflowers grown worldwide, mainly for juice production and fresh fruit, in climates ranging from cool subtropical (purple variety) to warm tropical (yellow variety). The bacterial leaf spot, caused byXanthomonas axonopodispv.passiflorae(Xap) can be a serious disease affecting passion fruit production in commercial orchards, particularly under moist field conditions. In this study we describe a first analysis of host gene expression in this pathosystem. We used suppression subtractive hybridization to construct twocDNAlibraries enriched for transcripts induced and repressed byXap, respectively, 24 h post inoculation with a highly virulent strain. High‐quality sequences were obtained resulting in 998 unisequences that were used for annotation. In accordance withBLASTXresults performed byBlast2GOtool, 86.7% of the unisequences showed similarity to other plant species' proteins related to different functional categories. Sixty‐three transcripts were similar toArabidopsis thalianadefence‐related proteins identified in thePLAZAplatform.In silicopredicted protein–protein interactions were detected on the basis of theSTRINGdatabase for 35 of the 63 defence‐related proteins. At this early stage of interaction, a set of genes was selected fromBlast2GOcategorization results and analysed by quantitative PCR (qPCR). The expression profiles changed in response to the pathogen for 76% of these genes (48/63) and the differences in expression ratios ranged from 0.51‐fold to 1.83‐fold. In later stages of interactions (5 and 9 days post inoculation) when disease‐associated symptoms were visible,qPCRanalyses were performed for 14 genes selected from both libraries. The expression profiles of all genes were found to be changed by the pathogen. The gene that responded most strongly to the pathogen attack encodes a lipoxygenase 2. In inoculated plants, its expression was induced 500‐fold and 300‐fold, 5 and 9 dpi, respectively, compared to controls, suggesting an important role of this gene in passion fruit defence. Moreover, we showed that most of the genes involved in well‐known pathogen recognition signalling pathways were repressed byXapand this lends support to the idea that the jasmonic acid signalling pathway fails to be activated during the first hours of interaction.