化学
自然键轨道
结晶学
金属
密度泛函理论
配体(生物化学)
债券定单
粘结长度
分子
计算化学
结合能
无机化学
晶体结构
原子物理学
有机化学
生物化学
受体
物理
作者
R. Shankar,P. Kolandaivel,Senthilkumar Lakshmipathi
摘要
Abstract The coordination geometries, electronic features, metal ion affinities, entropies, and the energetics of Li + , Na + , K + , Be 2+ , Mg 2+ , and Ca 2+ metal cations with different possible conformations of cysteine complexes were studied. The complexes were optimized using density functional theory (B3LYP) and second order Moller–Plesset Perturbation (MP2) theory methods using 6‐311 + +G** basis set. The interactions of the metal cations at different nucleophilic sites of cysteine conformations were considered after a careful selection among several binding sites. All the metal cations coordinate with cysteine in a tridentate manner and also the most preferred position for the interaction. It is found that, the overall structural parameters of cysteine are not altered by metal ion substitution, but, the metal ion‐binding site has undergone a noticeable change. All the complexes were characterized by an electrostatic interaction between ligand and metal ions that appears slightly more pronounced for lithium and beryllium metal complexes. The metal ion affinity (MIA) and basis set superposition error (BSSE) corrected interaction energy were also computed for all the complexes. The effect of metal cations on the infrared (IR) stretching vibrational modes of amino NH bond, side chain thiol group SH bond, hydroxyl OH bond, and Carbonyl CO bond in cysteine molecules have also been studied. The nature of the metal ion‐ligand bond and the coordination properties were examined using natural bond order (NBO) at bond critical point (electron density and their Laplacian of electron density) through Atoms in Molecules (AIM) analyses. Copyright © 2010 John Wiley & Sons, Ltd.
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