Objective To study the value of fluorescence in situ hybridization (FISH) in detecting retinoic acid receptor alpha (RARα) rearrangement for the diagnosis of acute promyelocytic leukemia (APL). Methods A dual color break apart rearrangement probe for RARα gene and a dual color translocation probe for promyelocytic leukemia (PML)/RARα fusion gene were used to perform FISH in 4 patients with typical morphological changes of APL but lacking both t(15;17) and PML/RARα fusion transcript through karyotypic analysis and RT-PCR assay. Results Of the 4 patients, two had negative results, one showed a fusion signal indicating PML/RARα fusion gene in 80% of interphase cells, and the other one had no PML/RARα fusion gene but showed a duplication and rearrangement of RARα gene. Conclusions It is possible to detect RARα rearrangement by FISH which could not be found by karyotypic analysis or RT-PCR assay among a part of APL patients. Thus, it is helpful for the diagnosis of APL.