关系抽取
计算机科学
关系(数据库)
二元关系
任务(项目管理)
学习迁移
功能(生物学)
类型(生物学)
人工智能
萃取(化学)
数据挖掘
化学
数学
生态学
生物
工程类
色谱法
系统工程
离散数学
进化生物学
作者
Xia Sun,Chengcheng Fu,Suoqi Liu,Wenjie Chen,Rugang Zhong,Tingting He,Xingpeng Jiang
标识
DOI:10.1109/bibm52615.2021.9669738
摘要
Microbial interaction network is the foundation to understand the structure and function of microbial communities. However, there is currently less a comprehensive dataset of microbial interaction network. Using text mining technology, available microbial interaction knowledges could be extracted automatically from unstructured biomedical text data. However, the existing biomedical relation extraction tasks can only identify binary relations among microorganisms without differentiating complex interaction types. In this paper, we proposes a computational framework for the task of multi-type microbial relation extraction based on transfer learning. Transfer learning models were applied on large-scale unlabeled texts from PubMed, and predicted 2,132 standardized multi-type microbial interaction relationships among 682 bacterial species.
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