Heavy metal ions are widely recognized for their strong affinity and disruptive effects on biomacromolecules, such as polysaccharides. However, the underlying mechanism of their interactions remains unclear, hindering a comprehensive understanding that bridges molecular and macroscale properties. Herein, we investigate the interaction between the natural polysaccharide chitin and lead ion (Pb2+) using a combination of experimental and theoretical approaches from single-molecule to macroscale. We find that Pb2+ forms specific chelation with chitin, inducing distinct conformational changes and enhancing the mechanics of individual chains. Beyond isolated chains, Pb2+ can also stably chelate multiple chains and induce significant aggregation of chitin, accompanied by ordered molecular alignment and organization. As a result, the macroscale structures display markedly improved mechanical performance, characterized by an increase in both tensile strength and modulus. In contrast, light metal ions like Na+ do not exhibit specific interactions or induce notable impacts. These findings demonstrate a unified mechanism underlying the interaction between chitin and Pb2+, which offers mechanistic insights into the structure and behavior of polysaccharides in heavy metal environments.