动力学
分子动力学
化学
相(物质)
动能
对氨基苯甲酸
热力学
生物物理学
材料科学
结晶学
化学工程
计算化学
生物化学
物理
有机化学
生物
工程类
量子力学
作者
Peter J. Skrdla,Benjamin J. Coscia,Andrea Browning,John C. Shelley,Shiva Sekharan,Jacob Gavartin
标识
DOI:10.1021/acs.molpharmaceut.5c00426
摘要
The specific rate at which one crystalline phase converts to another can vary as a function of time under isothermal conditions. This behavior gives rise to sigmoidal kinetic transients that are characteristic of nucleation and growth. Such curves are commonly fitted using the Johnson-Mehl-Avrami-Erofe'ev-Kolmogorov (JMAEK) equation. However, due to the ambiguity surrounding the time exponent in the JMAEK model, we present an alternative two-parameter dispersive kinetic model (DKM) and apply it to the study of solution-mediated polymorphic conversions of the prototypical molecule, o-aminobenzoic acid (o-ABA) [Jiang, S.; Jansens, P. J.; ter Horst, J. H. Control over polymorph formation of o-aminobenzoic acid. Cryst. Growth Des. 2010, 10, 2541-2547]. Using our DKM, we reconstructed a distribution of activation energies, D(E), from each experimental transient. Then, using D(E), a corresponding particle size distribution (PSD) of the critical nuclei formed during phase transformation is predicted. Lastly, molecular dynamics (MD) simulations are performed to study the prenucleation aggregation behavior of o-ABA in solution, under experimentally relevant conditions, to complement the kinetic modeling of the macroscopic phase conversion in the solid state. We observe that o-ABA molecules weakly associate with each other to form a variety of "loose" aggregates. These aggregates are mostly dimers and trimers exhibiting H-bonding and π-π interactions in various configurations that generally do not conform to any of the known crystal packing arrangements of the most common o-ABA polymorphs. Therefore, the observed molecular self-association is more consistent with a nonclassical nucleation pathway whereby monomer densification occurs ahead of cluster formation and, eventually, structural ordering. Our molecular-level simulations in solution complement the original study performed using experimental measurements on bulk crystals, with the DKM serving to bridge the scale gap between the two approaches by providing a window into the nanoscale species (nuclei), ultimately impacting the overall rate of conversion.
科研通智能强力驱动
Strongly Powered by AbleSci AI