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Shimazuella kribbensis gen. nov., sp. nov., a mesophilic representative of the family Thermoactinomycetaceae

生物 16S核糖体RNA 二氨基酸 二氨基二甲酸 菌丝体 系统发育树 拉伤 植物 微生物学 细菌 基因 遗传学 基因序列 解剖
作者
Dong-Jin Park,Syed G. Dastager,Jae-Chan Lee,Soo‐Hwan Yeo,Jung‐Hoon Yoon,Chang‐Jin Kim
出处
期刊:International Journal of Systematic and Evolutionary Microbiology [Microbiology Society]
卷期号:57 (11): 2660-2664 被引量:40
标识
DOI:10.1099/ijs.0.65194-0
摘要

A mesophilic strain, designated A 9500 T , was isolated from a soil sample collected from Sobaek Mountain, South Korea, and its taxonomic position was investigated by using a polyphasic approach. The novel strain grew well on different ISP media and no diffusible pigments were produced. The optimum temperature for growth was 32 °C. The aerial mycelium was well developed, but not fragmented. The strain was Gram-positive, non-motile and formed endospores on vegetative and aerial hyphae with a spiny surface. Cell walls of strain A 9500 T contained meso -diaminopimelic acid as the diagnostic amino acid, but no characteristic sugars or other amino acids were found (chemotype-III). The major menaquinone was MK-9(H 4 ) and the minor menaquinone was MK-10(H 4 ) and they were detected at a ratio of 7 : 3. Phosphatidylethanolamine was the diagnostic phospholipid. The G+C content of the genomic DNA was 39.4 mol%. The major fatty acids were anteiso-C 15 : 0 (43.34 %), iso-C 16 : 0 (14.23 %) and C 16 : 0 (7.90 %), a composition that differed from members of related genera of the family Thermoactinomycetaceae . The novel strain formed a distinct clade in a phylogenetic tree based on 16S rRNA gene sequences. On the basis of a range of phenotypic and genotypic data and on 16S rRNA gene sequence similarities (88.35–90.38 %), it is suggested that strain A 9500 T represents a novel species in a new genus with the name Shimazuella kribbensis gen. nov., sp. nov. The type strain of the type species is A 9500 T (=KCTC 9933 T =DSM 45090 T ).
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