计算机科学
号码簿
管道(软件)
可扩展性
可视化
数据挖掘
数据库
软件
程序设计语言
操作系统
作者
Xiaoqiong Bao,Kaiyu Zhu,Xuefei Liu,Zhihang Chen,Ziwei Luo,Qi Zhao,Jian Ren,Zhixiang Zuo
出处
期刊:Bioinformatics
[Oxford University Press]
日期:2022-01-12
卷期号:38 (7): 2054-2056
被引量:4
标识
DOI:10.1093/bioinformatics/btac025
摘要
Abstract Summary MeRIPseqPipe is an integrated and automatic pipeline that can provide users a friendly solution to perform in-depth mining of MeRIP-seq data. It integrates many functional analysis modules, range from basic processing to downstream analysis. All the processes are embedded in Nextflow with Docker support, which ensures high reproducibility and scalability of the analysis. MeRIPseqPipe is particularly suitable for analyzing a large number of samples at once with a simple command. The final output directory is structured based on each step and tool. And visualization reports containing various tables and plots are provided as HTML files. Availability and implementation MeRIPseqPipe is freely available at https://github.com/canceromics/MeRIPseqPipe. Supplementary information Supplementary data are available at Bioinformatics online.
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