DNA
加合物
计算生物学
表观基因组
基因组不稳定性
DNA损伤
生物
DNA加合物
化学
遗传学
基因
DNA甲基化
基因表达
有机化学
作者
Sakshi Arora,Shiva Satija,Aayushi Mittal,Saveena Solanki,Sanjay Kumar Mohanty,Vaibhav Srivastava,Debarka Sengupta,Diptiranjan Rout,N. Arul Murugan,Roshan M. Borkar,Gaurav Ahuja
出处
期刊:ChemBioChem
[Wiley]
日期:2023-10-24
卷期号:25 (1)
被引量:1
标识
DOI:10.1002/cbic.202300577
摘要
Abstract Cellular genome is considered a dynamic blueprint of a cell since it encodes genetic information that gets temporally altered due to various endogenous and exogenous insults. Largely, the extent of genomic dynamicity is controlled by the trade‐off between DNA repair processes and the genotoxic potential of the causative agent (genotoxins or potential carcinogens). A subset of genotoxins form DNA adducts by covalently binding to the cellular DNA, triggering structural or functional changes that lead to significant alterations in cellular processes via genetic (e. g., mutations) or non‐genetic (e. g., epigenome) routes. Identification, quantification, and characterization of DNA adducts are indispensable for their comprehensive understanding and could expedite the ongoing efforts in predicting carcinogenicity and their mode of action. In this review, we elaborate on using Artificial Intelligence (AI)‐based modeling in adducts biology and present multiple computational strategies to gain advancements in decoding DNA adducts. The proposed AI‐based strategies encompass predictive modeling for adduct formation via metabolic activation, novel adducts’ identification, prediction of biochemical routes for adduct formation, adducts’ half‐life predictions within biological ecosystems, and, establishing methods to predict the link between adducts chemistry and its location within the genomic DNA. In summary, we discuss some futuristic AI‐based approaches in DNA adduct biology.
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