Universal DNA methylation age across mammalian tissues

DNA甲基化 生物 表观遗传学 甲基化 基因组印记 遗传学 发育生物学 基因 衰老 长寿 进化生物学 基因表达
作者
Ake T. Lu,Zhe Fei,Amin Haghani,Todd R. Robeck,Joseph A. Zoller,Caesar Z. Li,Robert Lowe,Yan Qi,Joshua Zhang,Hoàng Giang Vu,Julia Ablaeva,Victoria A. Acosta-Rodríguez,Danielle M. Adams,Javier Almunia,Ajoy Aloysius,Reza Ardehali,Adriana Arneson,C. Scott Baker,Gareth Banks,Katherine Belov,Nigel C. Bennett,Peter C. Black,Daniel T. Blumstein,Eleanor K. Bors,Charles E. Breeze,Robert T. Brooke,Janine L. Brown,Gerald G. Carter,Alex Caulton,Julie M. Cavin,Lisa Chakrabarti,Ioulia Chatzistamou,Hao Chen,Kai Chen,Priscila Chiavellini,Oi-Wa Choi,Shannon Clarke,Lisa Noelle Cooper,Marie‐Laurence Cossette,John W. Day,Joseph DeYoung,Stacy DiRocco,Christopher Dold,Erin Ehmke,Candice K. Emmons,Stephan Emmrich,Ebru Erbay,Claire Erlacher-Reid,Chris G. Faulkes,Steve Ferguson,Carrie J. Finno,Jennifer E. Flower,Jean‐Michel Gaillard,Eva Garde,Livia Gerber,Vadim N. Gladyshev,Vera Gorbunova,Rodolfo G. Goya,M. J. Grant,C. B. Green,Erin N. Hales,M. Bradley Hanson,Daniel W. Hart,Martin Haulena,Keely L. Herrick,Andrew N. Hogan,Carolyn J. Hogg,Timothy A. Hore,Taosheng Huang,Juan Carlos Izpisúa Belmonte,Anna J. Jasinska,Gareth Jones,Eve Jourdain,Olga Kashpur,Harold L. Katcher,Etsuko Katsumata,Vimala Kaza,Hippokratis Kiaris,Michæl S. Kobor,Paweł Kordowitzki,William R. Koski,Michael Krützen,Soon‐Bae Kwon,Brenda Larison,S. G. Lee,Marianne Lehmann,Jean‐François Lemaître,Arnold J. Levine,Li C,X. Li,A. R. Lim,David T.S. Lin,D. Lindemann,Tom J. Little,Nicholas Macoretta,Debra Maddox,Craig O. Matkin,Julie A. Mattison,Mélanie McClure,June Mergl,Jennifer J. Meudt,Gisele A. Montano,Khyobeni Mozhui,Jason Munshi‐South,Asieh Naderi,Martina Nagy,Pritika Narayan,Peter W. Nathanielsz,Ngọc Bích Nguỹên,Christof Niehrs,Justine K. O’Brien,Perrie O’Tierney-Ginn,Duncan T. Odom,Alexander G. Ophir,S. B. Osborn,Elaine A. Ostrander,Kim M. Parsons,K.C. Paul,Matteo Pellegrini,Katharina J. Peters,Amy B. Pedersen,Jessica L Petersen,Darren William Pietersen,Gabriela Medeiros de Pinho,Jocelyn Plassais,Jesse R. Poganik,Natalia A. Prado,Pradeep Reddy,Benjamin Rey,Beate Ritz,Jooke Robbins,Magdalena Rodríguez,Jennifer Russell,Elena Rydkina,Lindsay L. Sailer,Adam B. Salmon,Akshay Sanghavi,Kyle M. Schachtschneider,Dennis Schmitt,Todd L. Schmitt,Lars Schomacher,Lawrence B. Schook,Karen E. Sears,Adrian M. Seifert,Andrei Seluanov,Aaron B. A. Shafer,Dhanansayan Shanmuganayagam,Anastasia V. Shindyapina,M. Simmons,Kavita Singh,Indranil Sinha,Jesse Slone,Russell G. Snell,Elham Soltanmaohammadi,Matthew L Spangler,M. C. Spriggs,Lydia Staggs,Nicole Stedman,Karen J. Steinman,Donald T. Stewart,Victoria J Sugrue,Balázs Szladovits,Joseph S. Takahashi,M. Takasugi,Emma C. Teeling,Michael J. Thompson,B. Van Bonn,Sonja C. Vernes,Diego Villar,Harry V. Vinters,Mary C. Wallingford,Ning Wang,Robert K. Wayne,Gerald S. Wilkinson,Christopher K. Williams,Robert W. Williams,Xia Yang,Maojin Yao,Brent G. Young,B. Zhang,Zhe Zhang,Peng Zhao,Yang Zhao,Wanding Zhou,Jörg Zimmermann,Jason Ernst,Ken Raj,Steve Horvath
出处
期刊:Nature Aging 卷期号:3 (9): 1144-1166 被引量:13
标识
DOI:10.1038/s43587-023-00462-6
摘要

Aging, often considered a result of random cellular damage, can be accurately estimated using DNA methylation profiles, the foundation of pan-tissue epigenetic clocks. Here, we demonstrate the development of universal pan-mammalian clocks, using 11,754 methylation arrays from our Mammalian Methylation Consortium, which encompass 59 tissue types across 185 mammalian species. These predictive models estimate mammalian tissue age with high accuracy (r > 0.96). Age deviations correlate with human mortality risk, mouse somatotropic axis mutations and caloric restriction. We identified specific cytosines with methylation levels that change with age across numerous species. These sites, highly enriched in polycomb repressive complex 2-binding locations, are near genes implicated in mammalian development, cancer, obesity and longevity. Our findings offer new evidence suggesting that aging is evolutionarily conserved and intertwined with developmental processes across all mammals.
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