Extreme Dynamics in the BamA β-Barrel Seam

巴马 木桶(钟表) 折叠(DSP实现) 细菌外膜 生物物理学 化学 分子动力学 蛋白质折叠 结晶学 生物 生物化学 大肠杆菌 材料科学 基因 电气工程 工程类 计算化学 复合材料
作者
Pamela A. Doerner,Marcelo C. Sousa
出处
期刊:Biochemistry [American Chemical Society]
卷期号:56 (24): 3142-3149 被引量:59
标识
DOI:10.1021/acs.biochem.7b00281
摘要

BamA is an essential component of the β-barrel assembly machine (BAM) that is responsible for insertion and folding of β-barrel outer membrane proteins (OMPs) in Gram-negative bacteria. BamA is an OMP itself, and its β-barrel transmembrane domain is thought to catalyze OMP insertion and folding, although the molecular mechanism remains poorly understood. Crystal structures of BamA and complementary molecular dynamics simulations have shown that its β-barrel seam (the interface between the first and last barrel strands) is destabilized. This has led to mechanistic models in which the BamA barrel seam functions as a lateral gate that opens and successively accepts β-hairpins from a nascent OMP such that a nascent barrel can bud from BamA. Consistent with this model, disulfide locking of the BamA barrel seam is lethal in Escherichia coli. Here we show that disulfide locking of the BamA barrel has no effect on its ability to catalyze folding of a model OMP into liposomes. However, disulfide trapping experiments indicate that the BamA barrel is highly dynamic in the liposome membranes, with the β-strands at the barrel seam undergoing "register sliding" by more than 14 Å both up and down the membrane. Remarkably, these extreme dynamics were also observed in the BamA barrel in the context of the native E. coli outer membrane. These results are consistent with a model in which the BamA barrel dynamics induce defects in the outer membrane that facilitate insertion of nascent OMPs.
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