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African Swine Fever in the Russian Far East (2019–2020): Spatio-Temporal Analysis and Implications for Wild Ungulates

野猪 爆发 非洲猪瘟病毒 非洲猪瘟 家猪 地理 基因型 人口 生物 中国 牲畜 病毒 兽医学 病毒学 人口学 生态学 医学 考古 社会学 基因 林业 生物化学
作者
О. И. Захарова,Ilya Titov,Gogin Andrey,T.A. Sevskikh,Fedor I. Кorennoy,Denis Kolbasov,Levon Abrahamyan,A. A. Blokhin
出处
期刊:Frontiers in Veterinary Science [Frontiers Media]
卷期号:8: 723081-723081 被引量:19
标识
DOI:10.3389/fvets.2021.723081
摘要

African swine fever (ASF) is an emerging viral contagious disease affecting domestic pigs (DP) and wild boar (WB). ASF causes significant economic damage to the pig industry worldwide due to nearly 100% mortality and the absence of medical treatments. Since 2019, an intensive spread of ASF has been observed in the Russian Far East region. This spread raises concerns for epidemiologists and ecologists given the potential threat to the WB population, which is an essential member of the region's wild ungulates and provides a notable share of food resources for predatory species. This study aims to determine the genotype of ASF virus circulating in the region, reveal the spatio-temporal patterns of the ASF outbreaks' emergence, and assess the potential reduction of the regional fauna because of expected depopulation of WB. The first historical case of ASF in the study region was caused by an African swine fever virus (ASFV) isolated from DPs and belonging to Genotype 2, CVR1; IGR-2 (TRS +). Sequencing results showed no significant differences among ASFV strains currently circulating in the Russian Federation, Europe, and China. The spatiotemporal analysis with the space-time permutations model demonstrated the presence of six statistically significant clusters of ASF outbreaks with three clusters in DPs and one cluster in WBs. DP outbreaks prevail in the north-west regions of the study area, while northern regions demonstrate a mixture of DP and WB outbreaks. Colocation analysis did not reveal a statistically significant pattern of grouping of one category of outbreaks around the others. The possible damage to the region's fauna was assessed by modeling the total body mass of wild ungulates before and after the wild boars' depopulation, considering a threshold density of WB population of 0.025 head/km 2 , according to the currently in force National Plan on the ASF Eradication in Russia. The results suggest the total mass of ungulates of the entire study region will likely decrease by 8.4% (95% CI: 4.1–13.0%), while it may decrease by 33.6% (19.3–46.1%) in the Primorsky Krai, thereby posing an undeniable threat to the predatory species of the region.
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