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Aequorivita flava sp. nov., isolated from deep-sea sediments

生物 16S核糖体RNA 拉伤 系统发育树 拟杆菌 基因 基因组DNA 细菌 核糖体RNA α蛋白细菌 微生物学 植物 遗传学 解剖
作者
Xiangwei Chen,Jin‐Mei Xia,Xiaoteng Fu,Qiliang Lai,Jianning Wang,Yaping Du,Xiupian Liu,Guangyu Li,Xixiang Tang,Zongze Shao
出处
期刊:International Journal of Systematic and Evolutionary Microbiology [Microbiology Society]
卷期号:74 (9) 被引量:1
标识
DOI:10.1099/ijsem.0.006513
摘要

Three Gram-stain-negative, aerobic, non-motile, chemoheterotrophic, short-rod-shaped bacteria, designated CDY1-MB1 T , CDY2-MB3, and BDY3-MB2, were isolated from three marine sediment samples collected in the eastern Pacific Ocean. Phylogenetic analysis based on 16S rRNA gene sequences indicated that these strains were related to the genus Aequorivita and close to the type strain of Aequorivita vitellina F4716 T (with similarities of 98.0–98.1%). Strain CDY1-MB1 T can grow at 15–37 °C (optimum 30 °C) and in media with pH 6–9 (optimum, pH 7), and tolerate up to 10% (w/v) NaCl. The predominant cellular fatty acids of strain CDY1-MB1 T were iso-C 15 : 0 (20.7%) and iso-C 17 : 0 3-OH (12.8%); the sole respiratory quinone was menaquinone 6; the major polar lipids were phosphatidylethanolamine, two unidentified aminolipids and two unidentified polar lipids. The digital DNA–DNA hybridization/average nucleotide identity values between strains CDY1-MB1 T , CDY2-MB3, and BDY3-MB2 and A. vitellina F4716 T were 24.7%/81.6–81.7%, thereby indicating that strain CDY1-MB1 T should represent a novel species of the genus Aequorivita . The genomic DNA G+C contents were 37.6 % in all three strains. Genomic analysis showed the presence of genes related to nitrogen and sulphur cycling, as well as metal reduction. The genetic traits of these strains indicate their possible roles in nutrient cycling and detoxification processes, potentially shaping the deep-sea ecosystem’s health and resilience. Based upon the consensus of phenotypic and genotypic analyses, strain CDY1-MB1 T should be classified as a novel species of the genus Aequorivita , for which the name Aequorivita flava sp. nov. is proposed. The type strain is CDY1-MB1 T (=MCCC 1A16935 T =KCTC 102223 T ).

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