The data presented in this article are referred to the research article "A potential source of soil ecoenzymes: From the phylllosphere to soil via throughfall" (Mori et al., 2019). The data included the activities of β-1,4-glucosidase (BG, EC 3.2.1.21), β-d-cellobiosidase (CBH, EC 3.2.1.91), β-1,4-N-acetyl-glucosaminidase (NAG, EC 3.2.1.52), leucine amino peptidase (LAP, EC 3.4.11.1), polyphenol oxidase (PPO, EC 1.10.3.2), and phosphomonoesterase (PME, EC 3.1.3.2). The informatin of study sites and sampling method are shown in Fig. 1 and 2.