生物
管家基因
数据库
基因
基因表达
RNA序列
功能(生物学)
表达式(计算机科学)
计算生物学
遗传学
转录组
计算机科学
程序设计语言
作者
Lin Xia,Dong Zou,Jian Sang,Xiwei Xu,Hongyan Yin,Mengwei Li,Shizhou Wu,Songnian Hu,Lili Hao,Zhang Zhang
标识
DOI:10.1016/j.jgg.2017.05.003
摘要
Rice is one of the most important stable food as well as a monocotyledonous model organism for the plant research community. Here, we present RED (Rice Expression Database; http://expression.ic4r.org), an integrated database of rice gene expression profiles derived entirely from RNA-Seq data. RED features a comprehensive collection of 284 high-quality RNA-Seq experiments, integrates a large number of gene expression profiles and covers a wide range of rice growth stages as well as various treatments. Based on massive expression profiles, RED provides a list of housekeeping and tissue-specific genes and dynamically constructs co-expression networks for gene(s) of interest. Besides, it provides user-friendly web interfaces for querying, browsing and visualizing expression profiles of concerned genes. Together, as a core resource in BIG Data Center, RED bears great utility for characterizing the function of rice genes and better understanding important biological processes and mechanisms underlying complex agronomic traits in rice.
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