分子动力学
力场(虚构)
混溶性
极化率
氢键
生物系统
水模型
化学物理
静电学
计算机科学
化学
统计物理学
纳米技术
分子
材料科学
物理
计算化学
聚合物
物理化学
有机化学
人工智能
生物
作者
Paulo C. T. Souza,Riccardo Alessandri,Jonathan Barnoud,Sebastian Thallmair,Ignacio Faustino,Fabian Grünewald,Ilias Patmanidis,Haleh Abdizadeh,Bart M. H. Bruininks,Tsjerk A. Wassenaar,P. Kroon,Josef Melcr,Vincent Nieto,Valentina Corradi,Hanif M. Khan,Jan Domański,Matti Javanainen,Hector Martinez‐Seara,Nathalie Reuter,Robert B. Best
出处
期刊:Nature Methods
[Nature Portfolio]
日期:2021-03-29
卷期号:18 (4): 382-388
被引量:981
标识
DOI:10.1038/s41592-021-01098-3
摘要
The coarse-grained Martini force field is widely used in biomolecular simulations. Here we present the refined model, Martini 3 ( http://cgmartini.nl ), with an improved interaction balance, new bead types and expanded ability to include specific interactions representing, for example, hydrogen bonding and electronic polarizability. The updated model allows more accurate predictions of molecular packing and interactions in general, which is exemplified with a vast and diverse set of applications, ranging from oil/water partitioning and miscibility data to complex molecular systems, involving protein–protein and protein–lipid interactions and material science applications as ionic liquids and aedamers. Martini 3.0 is an updated and reparametrized force field for coarse-grained molecular dynamics simulations with new bead types and an expanded ability to model molecular packing and interactions.
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