Disulfidptosis-related gene in acute myocardial infarction and its diagnostic value and functions based on bioinformatics analysis and machine learning

基因 小桶 肌动蛋白细胞骨架 计算生物学 生物信息学 微阵列分析技术 基因调控网络 生物 基因表达 遗传学 细胞 细胞骨架 转录组
作者
Liwen Chen,Jinru Wei,Guo‐Xiong Deng,Guien Xu
出处
期刊:Frontiers in Cardiovascular Medicine [Frontiers Media]
卷期号:12
标识
DOI:10.3389/fcvm.2025.1513342
摘要

Background Acute myocardial infarction (AMI) is a major cause of morbidity and mortality. Disulfidptosis, a novel form of programmed cell death, has been largely unexplored in AMI. This study aims to identify disulfidptosis-related genes in AMI and assess their diagnostic potential using bioinformatics and machine learning. Methods The microarray datasets GSE60993 and GSE61144, associated with Acute Myocardial Infarction (AMI), were obtained from the Gene Expression Omnibus (GEO) database. Differential disulfidptosis-associated genes were identified via differential expression analysis. The disulfidptosis related genes were collected from FerrDb V2 and the differentially expressed disulfidptosis related genes were utilized to construct a Protein-Protein Interaction (PPI) network. Key genes were identified utilizing a Protein-Protein Interaction (PPI) network and plugins available in Cytoscape. The key genes were used to detect potential biomarkers by receiver operating characteristic (ROC) analysis.Next, GO and KEGG analyses, as well as correlation analysis were performed on the key genes, and potential drug molecules targeting these genes were also analyzed. At the same time, key genes further screened by Support Vector Machine (SVM), Lasso regression, as well as random forest. By intersecting the results of the three, we ended up with hub genes for AMI. The expression of these key genes was verified using external dataset GSE61144. Results A total of 16 differentially expressed disulfidptosis related genes were identified and these genes were mainly enriched in the pathways of “regulation of actin cytoskeleton organization”, “regulation of actin filament-based process”, “regulation of actin filament organization”, “cell cortex”, “cell leading edge”, “cadherin binding”, “actin filament bindin, and “D-glucose transmembrane transporter activity”. The top 10 hub genes ACTB, RAC1, IQGAP1, FLNB, MYL6, ABI2, DBN1, PRDX1, SLC2A1 and SLC2A3 were identified from the PPI network. Further screening using Support Vector Machine (SVM), Lasso regression and random forest, and intersecting the results of these analyses, led to the identification of DBN1, RAC1, and SLC2A3 as final hub genes in AMI. While the final key genes DBN1 and SLC2A3 were significantly differentially expressed in external dataset GSE61144 with AUC ≥ 0.7. Conclusion In this study, we identified differentially expressed disulfidptosis related genes in blood samples from AMI patients using existing datasets. The research delved into the expression patterns and molecular mechanisms of differentially expressed disulfidptosis related genes in AMI, offering a foundation for precise AMI diagnosis and the identification of novel therapeutic targets.

科研通智能强力驱动
Strongly Powered by AbleSci AI
更新
PDF的下载单位、IP信息已删除 (2025-6-4)

科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
Panjiao完成签到 ,获得积分10
6秒前
KALIdemo158完成签到,获得积分10
10秒前
Likz完成签到,获得积分10
10秒前
eeeeeeenzyme完成签到 ,获得积分10
12秒前
KALIdemo158发布了新的文献求助40
13秒前
shuqi完成签到 ,获得积分10
13秒前
Orange应助llllllll采纳,获得10
13秒前
张子怡完成签到 ,获得积分10
21秒前
长情以蓝完成签到 ,获得积分10
24秒前
afterglow完成签到 ,获得积分10
24秒前
29秒前
铛铛铛完成签到,获得积分10
34秒前
llllllll发布了新的文献求助10
34秒前
医学小王完成签到 ,获得积分10
40秒前
科研通AI5应助杨冀军采纳,获得30
43秒前
王泓洋完成签到 ,获得积分10
48秒前
迅速的念芹完成签到 ,获得积分10
56秒前
妮妮完成签到 ,获得积分10
56秒前
ken131完成签到 ,获得积分0
57秒前
Smoiy完成签到 ,获得积分10
1分钟前
1分钟前
杨冀军发布了新的文献求助30
1分钟前
时光倒流的鱼完成签到,获得积分10
1分钟前
草莓熊1215完成签到 ,获得积分10
1分钟前
HHEHK完成签到 ,获得积分10
1分钟前
科研通AI2S应助Wen采纳,获得10
1分钟前
生动思远完成签到 ,获得积分10
1分钟前
1分钟前
十一苗完成签到 ,获得积分10
1分钟前
葛儿完成签到 ,获得积分10
1分钟前
魔幻的妖丽完成签到 ,获得积分10
1分钟前
Wen发布了新的文献求助10
1分钟前
man完成签到 ,获得积分10
1分钟前
Wen完成签到,获得积分10
1分钟前
liaomr完成签到 ,获得积分10
1分钟前
拉长的芷烟完成签到 ,获得积分10
1分钟前
tianmengkui完成签到,获得积分10
1分钟前
1分钟前
高高的丹雪完成签到 ,获得积分10
2分钟前
机智幻香完成签到 ,获得积分10
2分钟前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
An overview of orchard cover crop management 1000
二维材料在应力作用下的力学行为和层间耦合特性研究 600
基于3um sOl硅光平台的集成发射芯片关键器件研究 500
Progress and Regression 400
A review of Order Plesiosauria, and the description of a new, opalised pliosauroid, Leptocleidus demoscyllus, from the early cretaceous of Coober Pedy, South Australia 400
National standards & grade-level outcomes for K-12 physical education 400
热门求助领域 (近24小时)
化学 医学 生物 材料科学 工程类 有机化学 内科学 生物化学 物理 计算机科学 纳米技术 遗传学 基因 复合材料 化学工程 物理化学 病理 催化作用 免疫学 量子力学
热门帖子
关注 科研通微信公众号,转发送积分 4814447
求助须知:如何正确求助?哪些是违规求助? 4125892
关于积分的说明 12766518
捐赠科研通 3864102
什么是DOI,文献DOI怎么找? 2126628
邀请新用户注册赠送积分活动 1147973
关于科研通互助平台的介绍 1042883