Identification of ferroptosis-related genes in the progress of NASH

基因 小桶 生物 计算生物学 遗传学 脂肪性肝炎 HNF1A型 基因表达 候选基因 生物信息学 基因本体论 脂肪肝 疾病 医学 病理
作者
Linwei He,Jianming Wang,Baihua Tao,Ruolan Zhu,Changbing Li,Bo Ning
出处
期刊:Frontiers in Endocrinology [Frontiers Media]
卷期号:14: 1184280-1184280 被引量:13
标识
DOI:10.3389/fendo.2023.1184280
摘要

Background: Non-alcoholic steatohepatitis (NASH) is becoming more widespread, and some similarities exist between its etiology and ferroptosis. However, there are limited investigations on which ferroptosis-related genes (FRGs) are regulated in NASH and how to regulate them. We screened and validated the pivotal genes linked to ferroptosis in NASH to comprehend the function of ferroptosis in the development of NASH. Methods: Two mRNA expression data were obtained from the Gene Expression Omnibus (GEO) as the training set and validation set respectively. FRGs were downloaded from FerrDb. The candidate genes were obtained from the intersection between differentially expressed genes (DEGs) and FRGs, and further analyzed using the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). The hub genes were identified by the protein-protein interaction (PPI) network and Cytoscape. Then, FRGs closely related to the severity of NASH were identified and further confirmed using the validation set and mouse models. Ultimately, based on these genes, a diagnostic model was established to differentiate NASH from normal tissues using another data set from GEO. Results: successfully distinguished NASH from normal samples. Conclusion: In summary, our findings provide a new approach for the diagnosis, prognosis, and treatment of NASH based on FRGs, while advancing our understanding of ferroptosis in NASH.
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