Prediction and enrichment analyses of the Homo sapiens−Drosophila melanogaster COPD-related orthologs

黑腹果蝇 智人 果蝇属(亚属) 生物 基因 表型 模式生物 遗传学 慢性阻塞性肺病 黑腹菌 Wnt信号通路
作者
Erasmia Rouka,Natalia Gourgoulianni,Stefan Lüpold,Chrissi Hatzoglou,Konstantinos I Gourgoulianis,Sotirios G Zarogiannis
出处
期刊:American Journal of Physiology-regulatory Integrative and Comparative Physiology [American Physiological Society]
标识
DOI:10.1152/ajpregu.00092.2021
摘要

The significant similarities in airway epithelial cells between mammals and the fruit fly Drosophila melanogaster have rendered the latter an important model organism for studies of chronic inflammatory lung diseases. Focusing on the chronic obstructive pulmonary disease (COPD), we here mapped human gene orthologs associated with this disease in D. melanogaster to identify functionally equivalent genes for immediate, further screening with the fruit fly model. The DIOPT-DIST tool was accessed for the prediction of the COPD-associated orthologs between humans and Drosophila. Enrichment analyses with respect to pathways of the retrieved functional homologs were performed using the ToppFun and FlyMine tools, identifying 73 unique human genes as well as 438 fruit fly genes. The ToppFun analysis verified that the human gene list is associated with COPD phenotypes. Further, the FlyMine investigation highlighted that the Drosophila genes are functionally connected mainly with the 'ABC-family proteins mediated transport' and the 'beta-catenin independent WNT signaling pathway'. These results suggest an evolutionarily conserved role towards responses to inhaled toxicants and CO 2 in both species. We reason that the predicted orthologous genes should be further studied in the Drosophila models of cigarette smoke-induced COPD.
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