Objective To analyze the biochemical and immunological characters of different fractions during the purification of Haemophilus influenzae type b(Hib) conjugate.Methods Purify Hib conjugate by Sepharose CL-4B column chromatography and collect five different fractions for the determination of biochemical and immunological characters.Results The ratios of polysaccharide to protein in fractions 1,2 and 3 were about 0.4,and the high molecular conjugate contents were more than 80%.HPLC proved that all the relative molecular weights of the three fractions were more than 1 400 000.Good immune responses were induced in the mice immunized with the three fractions.The fraction 4,with a high molecular conjugate content of about 70% and a relative molecular weight of about 670 000,also induced good immune response in mice.However,the fraction 5,with a high molecular conjugate content of 23.7% and a relative molecular weight of 50 000,was mainly polysaccharide and vector protein in free form and only induced low immune response in mice.Conclusion The fractions 1,2 and 3 were needed to be collected during purification of Hib conjugate.The fraction 4 was conjugate with a low relative molecular weight.However,the fraction 5 was mainly free polysaccharide and protein.