Seasonal changes driving shifts of aquatic rhizosphere microbial community structure and the functional properties

Ecological floating beds could enable roots to become suspended and this allowed submerged roots to harbour various types of microbes. But, there was a lack of systematic research on microbial community structure changes and the influencing mechanisms. In this study, the ecological floating beds were constructed using selected plants [Cyperus involucratus Rottboll (Cyp), Thalia dealbata Fraser (Tha) and Iris tectorum Maxim (Iri)] that was compared with a control group [static water (S)]. The results showed that the highest abundance and diversity of root microbial communities were found in autumn, with the dominant taxa being Proteobacteria, Actinobacteriota, Cyanobacteria, Chloroflexi, Firmicutes, Bacteroidota, and Acidobacteriota. The microbial communities of Tha and Cyp groups greatly overlapped, while the Iri and control groups exhibited distinctly diverse communities. The root microbial populations of the same plant also reflected a large change in different seasons. Conversely, photosynthetic autotrophs and specialized anaerobes were more inclined to thrive at higher temperatures and lower DO concentrations and then they gradually became the dominant species. Microbial co-occurrences of the Tha and control groups were complex and showed both cooperation and competition. In addition, TOC was an important environmental factor that shaped the microbial community structures and DO changed the microbial community by affecting the abundance of aerobic and anaerobic bacteria. Microorganisms showed potential for degradation and metabolism of non-food substances with low/no corresponding metabolic pathways.