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Microbacterium candidum sp. nov. and Microbacterium capsulatum sp. nov., isolated from waste landfill

生物 16S核糖体RNA 微生物 微生物学 二氨基酸 基因组DNA 核糖体RNA 细菌 基因 生物化学 遗传学 基因序列
作者
Wen Wen,Yuanyuan Zhao,Bing Xie,Jie Lv
出处
期刊:International Journal of Systematic and Evolutionary Microbiology [Microbiology Society]
卷期号:75 (3)
标识
DOI:10.1099/ijsem.0.006715
摘要

Two Gram-stain-positive, oxidase-negative, non-motile and rod-shaped strains (ASV49 T and ASV81 T ) were isolated from a waste landfill in Shanghai, China. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the two strains are associated with members of the genus Microbacterium . Strains ASV49 T and ASV81 T were most closely related to Microbacterium rhizosphaerae JCM 31396 T and Microbacterium bovistercoris CCTCC AA 2018025 T with 98.5 and 98.0% 16S rRNA gene sequence similarities, respectively. The genomic DNA G+C contents of strains ASV49 T and ASV81 T were 69.5 and 70.5 mol %, respectively. Strains ASV49 T and ASV81 T exhibited the highest average nucleotide identity values of 81.7 and 85.3% against their closest relatives Microbacterium xylanilyticum JCM 13591 T and M. rhizosphaerae JCM 31396 T , respectively. Corresponding digital DNA–DNA hybridization values were 25.1 and 30.9%, respectively. Strains ASV49 T and ASV81 T grew optimally at pH 7.0 and 28 °C on Reasoner’s 2A. Strain ASV81 T produced capsules, but ASV49 T did not. Both isolates shared the following chemotaxonomic characteristics in common: the major fatty acids of anteiso-C 15 : 0 , iso-C 16 : 0 and anteiso-C 17 : 0 ; the respiratory quinones of MK-11, MK-12, MK-13 and MK-10; the polar lipids of diphosphatidylglycerol and phosphatidylglycerol; and the cell wall amino acids of ornithine, alanine, glycine and glutamic acid. Based on the genomic, phenotypic and chemical characteristics, strains ASV49 T and ASV81 T represent two novel species of the genus Microbacterium , for which the names Microbacterium candidum sp. nov. and Microbacterium capsulatum sp. nov. are proposed. The type strains are ASV49 T (=GDMCC 1.4109 T =JCM 36480 T ) and ASV81 T (=GDMCC 1.4110 T =JCM 36481 T ), respectively.
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