A comparative study of the developability of full-length antibodies, fragments, and bispecific formats reveals higher stability risks for engineered constructs

双特异性抗体 抗体 理论(学习稳定性) 化学 计算机科学 计算生物学 单克隆抗体 生物 免疫学 机器学习
作者
Itzel Condado Morales,Fabian Dingfelder,Isabel Waibel,Oliver M. Turnbull,Bhargav Patel,Zheng Cao,Jais Rose Bjelke,S. Grell,Anja Bennet,Alissa M. Hummer,Matthew I. J. Raybould,Charlotte M. Deane,Thomas Egebjerg,Nikolai Lorenzen,Paolo Arosio
出处
期刊:mAbs [Landes Bioscience]
卷期号:16 (1): 2403156-2403156 被引量:13
标识
DOI:10.1080/19420862.2024.2403156
摘要

Engineered antibody formats, such as antibody fragments and bispecifics, have the potential to offer improved therapeutic efficacy compared to traditional full-length monoclonal antibodies (mAbs). However, the translation of these non-natural molecules into successful therapeutics can be hampered by developability challenges. Here, we systematically analyzed 64 different antibody constructs targeting Tumor Necrosis Factor (TNF) which cover 8 distinct molecular format families, encompassing full-length antibodies, various types of single chain variable fragments, and bispecifics. We measured 15 biophysical properties related to activity, manufacturing, and stability, scoring variants with a flag-based risk approach and a recent in silico developability profiler. Our comparative assessment revealed that overall developability is higher for the natural full-length antibody format. Bispecific antibodies, antibodies with scFv fragments at the C-terminus of the light chain, and single-chain Fv antibody fragments (scFvs) have intermediate developability properties, while more complicated formats, such as scFv- scFv, bispecific mAbs with one Fab exchanged with a scFv, and diabody formats are collectively more challenging. In particular, our study highlights the propensity for fragmentation and aggregation, both in bulk and at interfaces, for many current engineered formats.
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