Phylogentic analysis of recent infectious bronchitis virus isolates from broiler chicken farms in Kafrelsheikh, Egypt

Infectious bronchitis (IB), caused by the IB virus (IBV), is a highly contagious disease and results in asignificant economic loss to the commercial chicken industry all over the world. The emergence of newvariants constitutes a major problem of avian infectious bronchitis virus (IBV). A recent increase inIBV-suspected outbreaks in the vaccinated chicken broiler farms in kafrelsheikh governorate, promptedto investigate the molecular characters of the circulating IBV. In present study, Tissue samples (trachea,lung and kidney) were collected aseptically from these farms; samples were examined for IBV byconventional PCR. Nine samples showed positive for IBV. Trails for virus isolation from the collectedorgans were carried out by inoculating tissue suspensions into embryonated specific pathogen-free(SPF) eggs via allantoic sac inoculation. The allantoic fluids were collected and tested using RT-PCRfor IBV S1 gene. Nine samples gave 570 bp amplicon. Sequence analyses of partial S1 spikeglycoprotein gene of three IBV field isolates in this study were made. The phylogenic tree wasconstructed; showed that the three recent IBV field isolates showed 93% to 95 % nucleotide sequenceidentity to IBV-CU-2-SP1, Eg/12120s/2012 and IBV/Egypt/0113/VIR9715/2012 strains.