Flavobacterium acetivorans sp. nov. and Flavobacterium galactosidilyticum sp. nov., psychrotolerant flavobacteria isolated from cultivated fish

生物 黄杆菌 16S核糖体RNA 黄杆菌科 系统发育树 微生物学 拉伤 基因组大小 基因组 系统发育学 核糖体RNA 细菌 基因 遗传学 动物 拟杆菌 假单胞菌 解剖
作者
İzzet Burçin Satıcıoğlu,Hilal Ay,Soner Altun,Nihed Ajmi,Enes Said Gündüz,Hüban Göçmen,Muhammed Duman
出处
期刊:International Journal of Systematic and Evolutionary Microbiology [Microbiology Society]
卷期号:74 (5)
标识
DOI:10.1099/ijsem.0.006369
摘要

Two yellow-coloured strains, F-29 T and F-340 T , were isolated from fish farms in Antalya and Mugla in 2015 and 2017 during surveillance studies. The 16S rRNA gene sequence analysis showed that both strains belong to the genus Flavobacterium . A polyphasic approach involving a comprehensive genome analysis was employed to ascertain the taxonomic provenance of the strains. The overall genome-relatedness indices of digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI) between the strains and the other members of the genus Flavobacterium were found to be well below the established thresholds of 70 and 95 %, respectively. The whole-genome-based phylogenetic analysis revealed that strain F-29 T is closely related to Flavobacterium granuli (dDDH 39.3 % and ANI 89.4 %), while strain F-340 T has a close relationship with the type strain of Flavobacterium pygoscelis (dDDH 25.6 % and ANI 81.5 %). Both strains were psychrotolerant with an optimum growth temperature of 25 °C. The chemotaxonomic characteristics of the strains were typical of the genus Flavobacterium . Both strains had phosphatidylethanolamine, aminolipids and unidentified lipids in their polar lipid profile and MK-6 as the isoprenoid quinone. The major fatty acids were iso-C 15 : 0 and anteiso-C 15 : 0 . The genome size of the strains was 3.5 Mb, while G+C contents were 35.3 mol% for strain F-29 T and 33.4 mol% for strain F-340 T . Overall, the characterizations confirmed that both strains are representatives of two novel species within the genus Flavobacterium , for which the names Flavobacterium acetivorans sp. nov. and Flavobacterium galactosidilyticum sp. nov. are proposed, with F-29 T (JCM 34193 T =KCTC 82253 T ) and F-340 T (JCM 34203 T =KCTC 82263 T ) as the type strains, respectively.
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