Translational landscape and metabolic characteristics of the etiolated tea plant (Camellia sinensis)

Albino tea plants (Camellia sinensis, Atps) are among the most attractive germplasm resources because of their unique phenotype and flavor. Although previous studies have extensively investigated the transcriptional and metabolic mechanisms in Atps, the lack of research at the translational level hinders the understanding of translation control and multi-omics integration. Here, we integrated the transcriptome, translatome, and metabolome to study the global translation and its effect on the metabolic characteristics of Atps. Comparative analysis of RNA-seq and Ribo-seq datasets indicated that 4,295 genes were expressed as synergic responses in etiolated leaves and were mainly enriched in the carbon metabolism and phytohormone pathways. Further integration-omics analyses revealed that the HY5 gene was upregulated at both the transcription and translation levels and repressed chlorophyll biosynthesis and flavonoids metabolism due to low levels of indole acetic acid and auxin response factors. Moreover, sequence characterizations (guanine-cytosine (GC) content, length, and normalized minimal free energy (NMFE)) highly influenced the translational efficiencies (TE) of genes and upstream open reading frames (uORFs), and a higher quantity of uORFs and TE were observed in EL, inhibiting the expression of downstream genes. In summary, we demonstrated that translation regulation contributes to causing leaf color variation and provided a valuable method for exploring the potential regulatory mechanisms controlling phytohormones that affect crop quality using multi-omics technology.