肿瘤科
比例危险模型
黑色素瘤
内科学
小桶
医学
生存分析
糖酵解
皮肤癌
单变量
基因
多元统计
癌症
生物
癌症研究
基因表达
转录组
遗传学
机器学习
新陈代谢
计算机科学
作者
Lingjun Zhu,Lianghui Zhang,Yi Chen,Yiwen Wang,Feifei Kong
标识
DOI:10.2174/1386207325666220520105634
摘要
Background: There exists a lack of effective tools predicting prognosis for cutaneous melanoma patients. Glycolysis plays an essential role in the carcinogenesis process. Objective: : We intended to construct a new prognosis model for cutaneous melanoma. Method: Based on the data from TCGA database, we conducted univariate Cox regression analysis and identified prognostic glycolysis-related genes (GRGs). Meanwhile, GSE15605 dataset was used to identify differentially expressed genes (DEGs). The intersection of prognostic GRGs and DEGs was extracted for the subsequent multivariate Cox regression analysis. Results: A prognostic signature containing ten GRGs was built, and the TCGA cohort was classified into high and low risk subgroups based on risk score of each patient. K-M analysis manifested that the overall survival of high-risk group was statistically worse than that of low-risk group. Further study indicated that the risk-score could be used as an independent prognostic factor which effectively predicted the clinical prognosis in patients with different age, gender and stage. GO and KEGG enrichment analysis showed DEGs between high and low risk groups were enriched in immune-related functions and pathways. In addition, a significant difference existed between high and low risk groups in infiltration pattern of immune cell and expression levels of inhibitory immune checkpoint genes. Conclusion: A new glycolysis-related gene signature was established for identifying cutaneous melanoma patients with poor prognosis and formulating individualized treatment for them.
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