Multi-gene testing in neurological disorders showed an improved diagnostic yield: data from over 1000 Indian patients

基因检测 医学 共济失调 神经学 白质营养不良 队列 儿科 生物信息学 病理 内科学 生物 精神科 疾病
作者
Aparna Ganapathy,Avshesh Mishra,Megha Rani Soni,Priyanka Kumar,Mukunth Sadagopan,Anil Kanthi,Irene Rosetta Pia Patric,St George',Aparajit Sridharan,T C Thyagarajan,S L Aswathy,Vidya Hegde,Swathi M Chinnappa,Swetha Nayanala,Manasa B Prakash,Vijayashree Gauribidanur Raghavendrachar,Minothi Parulekar,Vykuntaraju K Gowda,Sheela Nampoothiri,Ramshekhar Menon,Divya Pachat,Vrajesh Udani,Neeta Naik,Mahesh Kamate,Akella Radha Rama Devi,Pam Kunju,Mohandas Nair,Anaita Udwadia Hegde,M Pradeep Kumar,Soumya Sundaram,Preetha Tilak,Ratna Dua Puri,Krati Shah,Jayesh Sheth,Qurratulain Hasan,Frenny Sheth,Pooja Agrawal,Shanmukh Katragadda,Vamsi Veeramachaneni,Vijay Chandru,Ramesh Hariharan,Ashraf U. Mannan
出处
期刊:Journal of Neurology [Springer Nature]
卷期号:266 (8): 1919-1926 被引量:25
标识
DOI:10.1007/s00415-019-09358-1
摘要

Neurological disorders are clinically heterogeneous group of disorders and are major causes of disability and death. Several of these disorders are caused due to genetic aberration. A precise and confirmatory diagnosis in the patients in a timely manner is essential for appropriate therapeutic and management strategies. Due to the complexity of the clinical presentations across various neurological disorders, arriving at an accurate diagnosis remains a challenge.We sequenced 1012 unrelated patients from India with suspected neurological disorders, using TruSight One panel. Genetic variations were identified using the Strand NGS software and interpreted using the StrandOmics platform.We were able to detect mutations in 197 genes in 405 (40%) cases and 178 mutations were novel. The highest diagnostic rate was observed among patients with muscular dystrophy (64%) followed by leukodystrophy and ataxia (43%, each). In our cohort, 26% of the patients who received definitive diagnosis were primarily referred with complex neurological phenotypes with no suggestive diagnosis. In terms of mutations types, 62.8% were truncating and in addition, 13.4% were structural variants, which are also likely to cause loss of function.In our study, we observed an improved performance of multi-gene panel testing, with an overall diagnostic yield of 40%. Furthermore, we show that NGS (next-generation sequencing)-based testing is comprehensive and can detect all types of variants including structural variants. It can be considered as a single-platform genetic test for neurological disorders that can provide a swift and definitive diagnosis in a cost-effective manner.
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