Objective The Rho GTPase gene family plays a crucial role in key cellular functions. RAC3, one of the three genes in this family, along with RAC1 and RAC2, is highly expressed in the brain. It is specifically involved in neuronal differentiation, maturation, and migration. Therefore, dysregulation of RAC3 can lead to neurodevelopmental abnormalities. Methods Here we report two siblings, born to a nonconsanguineous couple, with global developmental delay, intellectual disability, and facial dysmorphism. Results Whole exome sequencing revealed a pathogenic heterozygous variant, c.184G>A (p.Glu62Lys), in exon 3 of the RAC3 gene [NM_005052.3], which is associated with neurodevelopmental disorder (NDD) with structural brain anomalies and dysmorphic facies. Conclusion RAC3-associated disorder should be considered as a differential diagnosis in children with NDDs and characteristic facial dysmorphism, including arched eyebrows, hypertelorism, and prominent eyes, along with central nervous system abnormalities. In our cases, we observed novel MRI brain findings that had not been previously reported, thereby expanding the spectrum of brain anomalies associated with this condition.