化学
分子
密度泛函理论
反应机理
脱质子化
氢键
甲醇
从头算
配体(生物化学)
计算化学
分子动力学
物理化学
催化作用
离子
有机化学
受体
生物化学
作者
Manuel J. Louwerse,Peter Vassilev,Evert Jan Baerends
摘要
We investigate the mechanism of methanol oxidation to formaldehyde by ironoxido ([FeIVO]2+), the alleged active intermediate in the Fenton reaction. The most likely reaction mechanisms are explored with density functional theory (DFT) calculations on microsolvated clusters in the gas phase and, for a selected set of mechanisms, with constrained Car-Parrinello molecular dynamics (CPMD) simulations in water solution. Helmholtz free energy differences are calculated using thermodynamic integration in a simulation box with 31 water molecules at 300 K. The mechanism of the reaction is investigated with an emphasis on whether FeO2+ attacks methanol at a C−H bond or at the O−H bond. We conclude that the most likely mechanism is attack by the oxido oxygen at the C−H bond (“direct CH mechanism”). We calculate an upper bound for the reaction Helmholtz free energy barrier in solution of 50 kJ/mol for the C−H hydrogen transfer, after which transfer of the O−H hydrogen proceeds spontaneously. An alternative mechanism, starting with coordination of methanol directly to Fe (“coordination OH mechanism”), cannot be ruled out, as it involves a reaction Helmholtz free energy barrier in solution of 44 ± 10 kJ/mol. However, this coordination mechanism has the disadvantage of requiring a prior ligand substitution reaction, to replace a water ligand by methanol. Because of the strong acidity of [FeO(H2O)5]2+, we also investigate the effect of deprotonation of a first-shell water molecule. However, this is found to increase the barriers for all mechanisms.
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