The auxin gatekeepers: Evolution and diversification of the YUCCA family

Abstract The critically important YUCCA (YUC) gene family is highly conserved and specific to the plant kingdom, primarily responsible for the final and rate-limiting step for indole-3-acetic acid (IAA) biosynthesis. IAA is an essential phytohormone, involved in virtually all aspects of plant growth and development. In addition, IAA is involved in fine-tuning plant responses to biotic and abiotic interactions and stresses. While the YUC gene family has significantly expanded throughout the plant kingdom, a detailed analysis of the evolutionary patterns driving this diversification has not been performed. Here we present a comprehensive phylogenetic analysis of the YUC family, combining YUCs from species representing key evolutionary plant lineages. We identify and hierarchically classify the YUC family into six distinct classes and 41 subclasses. YUC diversity and expansion is explained in the context of protein sequence conservation, as well as spatial and gene expression patterns. The presented YUC gene landscape offers new perspectives on the distribution and evolutionary trends of this crucial family, which facilitates further YUC characterization within plant development and response to environmental change. Short summary Comprehensive phylogenetic and sequence analysis of the YUC gene family presents new insights into factors driving evolutionary diversification. Highlights A phylogeny-based classification system for the YUCCA gene family is presented YUCCA evolution and structural diversification is described, supporting a fine-tuned spatial and temporal control of auxin biosynthesis, but also holds potential for alternative capabilities