A computational approach to understand the role of metals and axial ligands in artificial heme enzyme catalyzed C-H insertion.

化学 血红素 催化作用 配体(生物化学) 活动站点 密度泛函理论 组合化学 对接(动物) 金属 立体化学
作者
Reena Balhara,Ritwika Chatterjee,Garima Jindal
出处
期刊:Physical Chemistry Chemical Physics [The Royal Society of Chemistry]
卷期号:23 (15): 9500-9511 被引量:2
标识
DOI:10.1039/d1cp00412c
摘要

Engineered heme enzymes such as myoglobin and cytochrome P450s metalloproteins are gaining widespread importance due to their efficiency in catalyzing non-natural reactions. In a recent strategy, the naturally occurring Fe metal in the heme unit was replaced with non-native metals such as Ir, Rh, Co, Cu, etc., and axial ligands to generate artificial metalloenzymes. Determining the best metal-ligand for a chemical transformation is not a trivial task. Here we demonstrate how computational approaches can be used in deciding the best metal-ligand combination which would be highly beneficial in designing new enzymes as well as small molecule catalysts. We have used Density Functional Theory (DFT) to shed light on the enhanced reactivity of an Ir system with varying axial ligands. We look at the insertion of a carbene group generated from diazo precursors via N2 extrusion into a C-H bond. For both Ir(Me) and Fe systems, the first step, i.e., N2 extrusion is the rate determining step. Strikingly, neither the better ligand overlap with 5d orbitals on Ir nor the electrophilicity on the carbene centre play a significant role. A comparison of Fe and Ir systems reveals that a lower distortion in the Ir(Me)-porphyrin on moving from the reactant to the transition state renders it catalytically more active. We notice that for both metal porphyrins, the free energy barriers are affected by axial ligand substitution. Further, for Fe porphyrin, the axial ligand also changes the preferred spin state. We show that for the carbene insertion into the C-H bond, Fe porphyrin systems undergo a stepwise HAT (hydrogen atom transfer) instead of a concerted hydride transfer process. Importantly, we find that the substitution of the axial Me ligand on Ir to imidazole or chloride, or without an axial substitution changes the rate determining step of the reaction. Therefore, an optimum ligand that can balance the barriers for both steps of the catalytic cycle is essential. We subsequently used the QM cluster approach to delineate the protein environment's role and mutations in improving the catalytic activity of the Ir(Me) system.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
更新
大幅提高文件上传限制,最高150M (2024-4-1)

科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
uniphoton发布了新的文献求助10
刚刚
刚刚
Mike001发布了新的文献求助10
1秒前
热心小夏完成签到,获得积分10
1秒前
Mike001发布了新的文献求助10
2秒前
3秒前
ding应助eric采纳,获得10
3秒前
Mike001发布了新的文献求助200
3秒前
4秒前
Mike001发布了新的文献求助10
5秒前
Mike001发布了新的文献求助10
6秒前
7秒前
Mike001发布了新的文献求助10
7秒前
团团发布了新的文献求助20
8秒前
Mike001发布了新的文献求助10
9秒前
今后应助酱豆豆采纳,获得20
10秒前
Mike001发布了新的文献求助10
10秒前
happyxuexi发布了新的文献求助10
11秒前
我是老大应助开放的白玉采纳,获得10
12秒前
14秒前
15秒前
ovoclive完成签到,获得积分10
16秒前
17秒前
哈哈哈完成签到 ,获得积分10
18秒前
颜梦玉发布了新的文献求助10
19秒前
happyxuexi完成签到,获得积分10
19秒前
暮雪冰原完成签到 ,获得积分10
21秒前
22秒前
24秒前
木尼热发布了新的文献求助10
25秒前
大个应助团团采纳,获得20
26秒前
只有辣椒没有油完成签到 ,获得积分10
27秒前
可爱的函函应助NCNST-shi采纳,获得10
28秒前
29秒前
踔厉完成签到 ,获得积分10
30秒前
毛毛虫发布了新的文献求助10
33秒前
Bagpipe完成签到 ,获得积分10
37秒前
38秒前
38秒前
NCNST-shi发布了新的文献求助10
41秒前
高分求助中
Manual of Clinical Microbiology, 4 Volume Set (ASM Books) 13th Edition 1000
Sport in der Antike 800
De arte gymnastica. The art of gymnastics 600
Berns Ziesemer - Maos deutscher Topagent: Wie China die Bundesrepublik eroberte 500
Stephen R. Mackinnon - Chen Hansheng: China’s Last Romantic Revolutionary (2023) 500
Sport in der Antike Hardcover – March 1, 2015 500
Boris Pesce - Gli impiegati della Fiat dal 1955 al 1999 un percorso nella memoria 500
热门求助领域 (近24小时)
化学 材料科学 医学 生物 有机化学 工程类 生物化学 纳米技术 物理 内科学 计算机科学 化学工程 复合材料 遗传学 基因 物理化学 催化作用 电极 光电子学 量子力学
热门帖子
关注 科研通微信公众号,转发送积分 2422608
求助须知:如何正确求助?哪些是违规求助? 2111760
关于积分的说明 5346574
捐赠科研通 1839224
什么是DOI,文献DOI怎么找? 915590
版权声明 561205
科研通“疑难数据库(出版商)”最低求助积分说明 489698