元动力学
能源景观
直方图
代表(政治)
无量纲量
能量(信号处理)
先验与后验
计算机科学
数学优化
网格
应用数学
数学
算法
统计物理学
计算化学
化学
人工智能
分子动力学
统计
物理
几何学
热力学
图像(数学)
哲学
法学
政治学
认识论
政治
生物化学
作者
Jens Smiatek,Andreas Heuer
摘要
Abstract We present an efficient method for the calculation of free energy landscapes. Our approach involves a history‐dependent bias potential, which is evaluated on a grid. The corresponding free energy landscape is constructed via a histogram reweighting procedure a posteriori . Because of the presence of the bias potential, it can be also used to accelerate rare events. In addition, the calculated free energy landscape is not restricted to the actual choice of collective variables and can in principle be extended to auxiliary variables of interest without further numerical effort. The applicability is shown for several examples. We present numerical results for the alanine dipeptide and the Met‐Enkephalin in explicit solution to illustrate our approach. Furthermore, we derive an empirical formula that allows the prediction of the computational cost for the ordinary metadynamics variant in comparison with our approach, which is validated by a dimensionless representation. © 2011 Wiley Periodicals, Inc. J Comput Chem, 2011
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