Methods for Classical-Mechanical Molecular Simulation in Chemistry: Achievements, Limitations, Perspectives

计算机科学 分子动力学 统计物理学 多样性(控制论) 航程(航空) 化学空间 功能(生物学) 极限(数学) 采样(信号处理) 计算化学 化学 物理 数学 人工智能 工程类 航空航天工程 滤波器(信号处理) 数学分析 生物 进化生物学 药物发现 生物化学 计算机视觉
作者
Wilfred F. van Gunsteren,Chris Oostenbrink
出处
期刊:Journal of Chemical Information and Modeling [American Chemical Society]
卷期号:64 (16): 6281-6304 被引量:17
标识
DOI:10.1021/acs.jcim.4c00823
摘要

More than a half century ago it became feasible to simulate, using classical-mechanical equations of motion, the dynamics of molecular systems on a computer. Since then classical-physical molecular simulation has become an integral part of chemical research. It is widely applied in a variety of branches of chemistry and has significantly contributed to the development of chemical knowledge. It offers understanding and interpretation of experimental results, semiquantitative predictions for measurable and nonmeasurable properties of substances, and allows the calculation of properties of molecular systems under conditions that are experimentally inaccessible. Yet, molecular simulation is built on a number of assumptions, approximations, and simplifications which limit its range of applicability and its accuracy. These concern the potential-energy function used, adequate sampling of the vast statistical-mechanical configurational space of a molecular system and the methods used to compute particular properties of chemical systems from statistical-mechanical ensembles. During the past half century various methodological ideas to improve the efficiency and accuracy of classical-physical molecular simulation have been proposed, investigated, evaluated, implemented in general simulation software or were abandoned. The latter because of fundamental flaws or, while being physically sound, computational inefficiency. Some of these methodological ideas are briefly reviewed and the most effective methods are highlighted. Limitations of classical-physical simulation are discussed and perspectives are sketched.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
凌凌应助鲸鱼采纳,获得10
1秒前
1秒前
2秒前
英俊的铭应助佳音采纳,获得10
3秒前
3秒前
二牛发布了新的文献求助10
3秒前
4秒前
mzs发布了新的文献求助10
6秒前
幻想发布了新的文献求助10
7秒前
发阿发完成签到,获得积分10
8秒前
太阳发布了新的文献求助10
8秒前
8秒前
8秒前
wj发布了新的文献求助10
9秒前
斯文败类应助haozai采纳,获得10
10秒前
11秒前
cadcae发布了新的文献求助30
11秒前
123456发布了新的文献求助10
12秒前
13秒前
佳音发布了新的文献求助10
14秒前
华仔应助热情的修哥采纳,获得10
15秒前
Xenophobia发布了新的文献求助10
18秒前
18秒前
2898327537发布了新的文献求助10
18秒前
18秒前
凌凌应助太阳采纳,获得10
19秒前
20秒前
隐形曼青应助哭泣的新晴采纳,获得10
21秒前
科研通AI6.4应助congxin采纳,获得10
22秒前
天行马完成签到,获得积分10
23秒前
FashionBoy应助阿正采纳,获得10
24秒前
酷波er应助王致尧采纳,获得10
24秒前
wj完成签到,获得积分20
25秒前
25秒前
秦兴虎发布了新的文献求助30
25秒前
27秒前
27秒前
瑶崽发布了新的文献求助10
27秒前
28秒前
29秒前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
HYDROLYSE ACIDE DE QUELQUES DIOXASPIROCYCLANES 1314
Essentials of Carbohydrate Chemistry and Biochemistry, 4th Edition 800
Navigating Normative Orders. Interdisciplinary Perspectives 800
1 Peter and Christ's Descent to the Dead in Its Early Christian Reception 700
Organizational Behavior 510
Management and the Arts 510
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 内科学 物理 复合材料 催化作用 细胞生物学 无机化学 光电子学 物理化学 电极 基因
热门帖子
关注 科研通微信公众号,转发送积分 7749323
求助须知:如何正确求助?哪些是违规求助? 9297173
关于积分的说明 20238603
捐赠科研通 7330619
什么是DOI,文献DOI怎么找? 3309111
关于科研通互助平台的介绍 2460787
邀请新用户注册赠送积分活动 2321349