分子动力学
形式主义(音乐)
响铃
耦合常数
经典力学
物理
联轴节(管道)
统计物理学
常量(计算机编程)
机械
活塞(光学)
材料科学
计算机科学
量子力学
滤波器(信号处理)
艺术
视觉艺术
波前
冶金
程序设计语言
音乐剧
计算机视觉
作者
Scott E. Feller,Yuhong Zhang,Richard W. Pastor,Bernard R. Brooks
摘要
A new method for performing molecular dynamics simulations under constant pressure is presented. In the method, which is based on the extended system formalism introduced by Andersen, the deterministic equations of motion for the piston degree of freedom are replaced by a Langevin equation; a suitable choice of collision frequency then eliminates the unphysical ‘‘ringing’’ of the volume associated with the piston mass. In this way it is similar to the ‘‘weak coupling algorithm’’ developed by Berendsen and co-workers to perform molecular dynamics simulation without piston mass effects. It is shown, however, that the weak coupling algorithm induces artifacts into the simulation which can be quite severe for inhomogeneous systems such as aqueous biopolymers or liquid/liquid interfaces.
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