Combined metabolomics with transcriptomics reveals potential plasma biomarkers correlated with non-small-cell lung cancer proliferation through the Akt pathway

代谢组学 生物标志物 通路分析 接收机工作特性 肺癌 生物标志物发现 代谢物 转录组 曲线下面积 癌症 代谢组 生物 生物信息学 癌症研究 肿瘤科 计算生物学 化学 医学 内科学 蛋白质组学 生物化学 基因表达 基因
作者
Jianan Zheng,Zheng Yuan,Wenjing Li,Jinxiu Zhi,Xinjie Huang,Wei Zhu,Zhongqiu Liu,Lingzhi Gong
出处
期刊:Clinica Chimica Acta [Elsevier BV]
卷期号:530: 66-73 被引量:15
标识
DOI:10.1016/j.cca.2022.02.018
摘要

Non-small-cell lung cancer (NSCLC) is one of the main types of lung cancer. Due to lack of effective biomarkers for early detection of NSCLC, the therapeutic effect is not ideal. This study aims to reveal potential biomarkers for clinical diagnosis.The plasma metabolic profiles of the patients were characterized by liquid chromatography-mass spectrometry (LC-MS). Differential metabolites were screened by p less than 0.05 and VIP greater than 1. Multivariate statistical analysis was used to search for potential biomarkers. Receiver operating characteristic (ROC) curve was used to evaluate the predictors of potential biomarkers. Pathway enrichment analysis was performed on metabolomics data by Ingenuity Pathway Analysis (IPA) and transcriptomics data from GEO were used for validation.A plasma metabolite biomarker panel including 13(S)-hydroxyoctadecadienoic acid (13(S)-HODE) and arachidonic acid was chose. The area under the ROC curve were 0.917, 0.900 and 0.867 for the panel in the different algorithm like Partial Least Squares Discrimination Analysis (PLS-DA), Support Vector Machine (SVM), Random Forest (RF). The candidate biomarkers were associated with the Akt pathway. Genes involved in the biological pathway had significant changes in the expression levels.13(S)-HODE and arachidonic acid may be potential biomarkers of NSCLC. The Akt pathway was associated with this biomarker panel in NSCLC. Further studies are needed to clarify the mechanisms of disruption in this pathway.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
Jouleken完成签到,获得积分10
3秒前
3秒前
科研通AI5应助Lin_Yongqi采纳,获得10
3秒前
麻花精发布了新的文献求助10
4秒前
4秒前
中平完成签到 ,获得积分10
5秒前
OVERSEER完成签到,获得积分20
6秒前
Jasper应助猪猪hero采纳,获得10
6秒前
平常的毛豆应助mltyyds采纳,获得10
7秒前
SYLH应助ffeng采纳,获得10
8秒前
cdercder应助清爽胡萝卜采纳,获得10
8秒前
麻花精完成签到,获得积分10
10秒前
科研通AI5应助McchainQ采纳,获得10
11秒前
judy发布了新的文献求助10
11秒前
Alpha发布了新的文献求助20
12秒前
14秒前
寻风完成签到,获得积分10
15秒前
15秒前
嘟嘟豆806完成签到 ,获得积分10
15秒前
16秒前
张芙瑶发布了新的文献求助10
18秒前
19秒前
19秒前
牛牛牛完成签到,获得积分10
19秒前
ren完成签到,获得积分10
21秒前
Mason发布了新的文献求助30
21秒前
ryj发布了新的文献求助10
22秒前
McchainQ发布了新的文献求助10
23秒前
冷咖啡离开了杯垫完成签到,获得积分10
24秒前
lihoujunertou发布了新的文献求助50
24秒前
ash7856完成签到,获得积分20
24秒前
小二郎应助ren采纳,获得10
24秒前
呆萌幻竹完成签到 ,获得积分10
25秒前
栗子味的茶完成签到 ,获得积分10
26秒前
ryj完成签到,获得积分10
27秒前
Alpha完成签到,获得积分10
27秒前
千寒完成签到,获得积分10
28秒前
猪猪hero发布了新的文献求助10
29秒前
Kirito应助李俊枫采纳,获得10
31秒前
32秒前
高分求助中
Applied Survey Data Analysis (第三版, 2025) 800
Narcissistic Personality Disorder 700
Assessing and Diagnosing Young Children with Neurodevelopmental Disorders (2nd Edition) 700
Handbook of Experimental Social Psychology 500
The Martian climate revisited: atmosphere and environment of a desert planet 500
Transnational East Asian Studies 400
Towards a spatial history of contemporary art in China 400
热门求助领域 (近24小时)
化学 材料科学 医学 生物 工程类 有机化学 物理 生物化学 纳米技术 计算机科学 化学工程 内科学 复合材料 物理化学 电极 遗传学 量子力学 基因 冶金 催化作用
热门帖子
关注 科研通微信公众号,转发送积分 3845856
求助须知:如何正确求助?哪些是违规求助? 3388210
关于积分的说明 10552030
捐赠科研通 3108791
什么是DOI,文献DOI怎么找? 1713127
邀请新用户注册赠送积分活动 824593
科研通“疑难数据库(出版商)”最低求助积分说明 774927