Fractal dimension and lacunarity measures of glioma subcomponents are discriminative of the grade of gliomas and IDH status

缺陷 胶质瘤 分形维数 医学 分形分析 判别式 异柠檬酸脱氢酶 分形 病理 肿瘤科 数学 核医学 生物 人工智能 癌症研究 计算机科学 生物化学 数学分析 酶
作者
Neha Yadav,Ankit Mohanty,V Aswin,Vivek Tiwari
出处
期刊:NMR in Biomedicine [Wiley]
卷期号:37 (12): e5272-e5272 被引量:5
标识
DOI:10.1002/nbm.5272
摘要

Since the overall glioma mass and its subcomponents-enhancing region (malignant part of the tumor), non-enhancing (less aggressive tumor cells), necrotic core (dead cells), and edema (water deposition)-are complex and irregular structures, non-Euclidean geometric measures such as fractal dimension (FD or "fractality") and lacunarity are needed to quantify their structural complexity. Fractality measures the extent of structural irregularity, while lacunarity measures the spatial distribution or gaps. The complex geometric patterns of the glioma subcomponents may be closely associated with the grade and molecular landscape. Therefore, we measured FD and lacunarity in the glioma subcomponents and developed machine learning models to discriminate between tumor grades and isocitrate dehydrogenase (IDH) gene status. 3D fractal dimension (FD3D) and lacunarity (Lac3D) were measured for the enhancing, non-enhancing plus necrotic core, and edema-subcomponents using preoperative structural-MRI obtained from the The Cancer Genome Atlas (TCGA) and University of California San Francisco Preoperative Diffuse Glioma MRI (UCSF-PDGM) glioma cohorts. The FD3D and Lac3D measures of the tumor-subcomponents were then compared across glioma grades (HGGs: high-grade gliomas vs. LGGs: low-grade gliomas) and IDH status (mutant vs. wild type). Using these measures, machine learning platforms discriminative of glioma grade and IDH status were developed. Kaplan-Meier survival analysis was used to assess the prognostic significance of FD3D and Lac3D measurements. HGG exhibited significantly higher fractality and lower lacunarity in the enhancing subcomponent, along with lower fractality in the non-enhancing subcomponent compared to LGG. This suggests that a highly irregular and complex geometry in the enhancing-subcomponent is a characteristic feature of HGGs. A comparison of FD3D and Lac3D between IDH-wild type and IDH-mutant gliomas revealed that mutant gliomas had ~2.5-fold lower FD3D in the enhancing-subcomponent and higher FD3D with lower Lac3D in the non-enhancing subcomponent, indicating a less complex and smooth enhancing subcomponent, and a more continuous non-enhancing subcomponent as features of IDH-mutant gliomas. Supervised ML models using FD3D from both the enhancing and non-enhancing subcomponents together demonstrated high-sensitivity in discriminating glioma grades (~97.9%) and IDH status (~94.4%). A combined fractal estimation of the enhancing and non-enhancing subcomponents using MR images could serve as a non-invasive, precise, and quantitative measure for discriminating glioma grade and IDH status. The combination of 2-hydroxyglutarate-magnetic resonance spectroscopy (2HG-MRS) with FD3D and Lac3D quantification may be established as a robust imaging signature for glioma subtyping.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
Menglong发布了新的文献求助10
刚刚
Parrot_PAI发布了新的文献求助10
1秒前
1秒前
1秒前
大个的应助被脆皮黑巧采纳,获得10
2秒前
研友_Lpaepn完成签到,获得积分10
2秒前
youziPrincess完成签到,获得积分10
2秒前
QDU关闭了QDU的文献求助
3秒前
3秒前
austinluo的应助被爱睡采纳,获得10
3秒前
狂野谷冬发布了新的文献求助10
4秒前
丘比特的应助被ZFYang采纳,获得10
4秒前
dsw发布了新的文献求助10
4秒前
笨笨如之完成签到 ,获得积分10
4秒前
5秒前
5秒前
5秒前
TT发布了新的文献求助10
6秒前
科研通AI6.2的应助被Jenny采纳,获得10
6秒前
木笔完成签到,获得积分10
8秒前
小晞完成签到 ,获得积分10
8秒前
mro发布了新的文献求助10
8秒前
领导范儿的应助被璇子采纳,获得10
8秒前
李健的应助被受不了12345采纳,获得10
9秒前
9秒前
爆米花的应助被hxm采纳,获得10
11秒前
Parrot_PAI完成签到,获得积分10
11秒前
MiyaGuo发布了新的文献求助10
12秒前
满意的山水完成签到,获得积分10
12秒前
思源的应助被快乐的菠萝采纳,获得10
12秒前
12秒前
13秒前
14秒前
14秒前
付创发布了新的文献求助10
14秒前
SS1988发布了新的文献求助10
15秒前
15秒前
16秒前
安静的缘分完成签到,获得积分10
17秒前
1123完成签到,获得积分10
17秒前
高分求助中
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Les Mantodea De Guyane 2000
从自在到自觉:中华民族观念形成研究:全二册 800
Guidelines for fracture-safe and fatigue-reliable design of steel structures 600
Problems and Solutions for Integer and Combinatorial Optimization: Building Skills in Discrete Optimization 600
Organizational Behavior 510
桑白皮エキスの実験的, 臨床的育毛効果について 500
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 计算机科学 工程类 有机化学 化学工程 生物化学 物理 复合材料 内科学 催化作用 光电子学 人工智能 细胞生物学 无机化学 物理化学 数学
热门帖子
关注 科研通微信公众号,转发送积分 7999010
求助须知:如何正确求助?哪些是违规求助? 9452696
关于积分的说明 21140446
捐赠科研通 7572098
什么是DOI,文献DOI怎么找? 3380743
关于科研通互助平台的介绍 2513648
邀请新用户注册赠送积分活动 2414638