Microorganisms play central roles in regulating soil phosphorus (P) cycling and availability retention. However, how long-term nitrogen (N) fertiliser application in intensively managed croplands affects soil microbial P metabolism remains unclear. In this study, we investigated the effects of different N applications on availability P, phosphatase activity, P functional genes, and microbes that participate in organic P mineralisation and inorganic P dissolution in a continuously managed (6 years) maize fields. The results showed that as the rates of N fertiliser increased, soil pH decreased, whereas AP content increased first before decreasing (N180 highest). A similar trend was found in the activities of alkaline and acid phosphatase. Furthermore, an increase in the N fertiliser application rate enhanced the abundance of phoX , pqqC , and gcd genes but decreased that of phoD and phoA genes. Structural equation modelling and random forest analysis revealed that total N and pH were the most important predictors of phoD - and pqqC -harbouring microbial composition, respectively. N180 and N270 treatments harboured higher modularity, nodes, links, and proportion of positive linkages in the phoD - and pqqC -harbouring microbial co-occurrence networks. Overall, different N applications reshaped the phoD - and pqqC -harbouring communities through direct or indirect effects, making it more flexible and efficient in improving the P-utilisation rate. These results have implications for sustainable agricultural management and will be helpful for deepening our understanding of soil microbial interaction and P activation mechanisms. • High N application decreases the available phosphorus and pH in soil. • P function gene and P-mobilisation microbes differ in sensitivity to added N. • Long-term N fertilisation reshapes pqqC - and phoD -harboring communities. • N addition induces an increase in microbial competition for P in the maize system.