霍乱弧菌
生物
基因组
遗传学
系统发育树
打字
噬菌体
埃尔托
霍乱
全基因组测序
噬菌体分型
DNA测序
DNA
基因
微生物学
大肠杆菌
细菌
作者
Mayukh Das,Ranjan K. Nandy,Tushar Suvra Bhowmick,Shinji Yamasaki,Asok Ghosh,G B Nair,B L Sarkar
出处
期刊:Intervirology
[Karger Publishers]
日期:2011-03-23
卷期号:55 (3): 185-193
被引量:7
摘要
<i>Objectives:</i> In countries where cholera is endemic, <i>Vibrio cholerae</i> O1 bacteriophages have been detected in sewage water. These have been used to serve not only as strain markers, but also for the typing of <i>V. cholerae</i> strains. Vibriophage N4 (ATCC 51352-B1) occupies a unique position in the new phage-typing scheme and can infect a larger number of <i>V. cholerae</i> O1 biotype El Tor strains. Here we characterized the complete genome sequence of this typing vibriophage. <i>Methods:</i> The complete DNA sequence of the N4 genome was determined by using a shotgun sequencing approach. <i>Results:</i> Complete genome sequence explored that phage N4 is comprised of one circular, double-stranded chromosome of 38,497 bp with an overall GC content of 42.8%. A total of 47 open reading frames were identified and functions could be assigned to 30 of them. Further, a close relationship with another vibriophage, VP4, and the enterobacteriophage T7 could be established. DNA-DNA hybridization among <i>V. cholerae</i> O1 and O139 phages revealed homology among O1 vibriophages at their genomic level. <i>Conclusions:</i> This study indicates two evolutionary distinctive branches of the possible phylogenetic origin of O1 and O139 vibriophages and provides an unveiled collection of information on viral gene products of typing vibriophages.
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