Reliable and efficient reaction path and transition state finding for surface reactions with the growing string method

弦(物理) 过渡状态 化学 基本反应 过渡态理论 曲面(拓扑) 路径(计算) 化学物理 计算机科学 计算化学 物理 理论物理学 数学 催化作用 几何学 反应速率常数 量子力学 动力学 生物化学 有机化学 程序设计语言
作者
Mina Jafari,Paul M. Zimmerman
出处
期刊:Journal of Computational Chemistry [Wiley]
卷期号:38 (10): 645-658 被引量:60
标识
DOI:10.1002/jcc.24720
摘要

The computational challenge of fast and reliable transition state and reaction path optimization requires new methodological strategies to maintain low cost, high accuracy, and systematic searching capabilities. The growing string method using internal coordinates has proven to be highly effective for the study of molecular, gas phase reactions, but difficulties in choosing a suitable coordinate system for periodic systems has prevented its use for surface chemistry. New developments are therefore needed, and presented herein, to handle surface reactions which include atoms with large coordination numbers that cannot be treated using standard internal coordinates. The double‐ended and single‐ended growing string methods are implemented using a hybrid coordinate system, then benchmarked for a test set of 43 elementary reactions occurring on surfaces. These results show that the growing string method is at least 45% faster than the widely used climbing image‐nudged elastic band method, which also fails to converge in several of the test cases. Additionally, the surface growing string method has a unique single‐ended search method which can move outward from an initial structure to find the intermediates, transition states, and reaction paths simultaneously. This powerful explorative feature of single ended‐growing string method is demonstrated to uncover, for the first time, the mechanism for atomic layer deposition of TiN on Cu(111) surface. This reaction is found to proceed through multiple hydrogen‐transfer and ligand‐exchange events, while formation of H‐bonds stabilizes intermediates of the reaction. Purging gaseous products out of the reaction environment is the driving force for these reactions. © 2017 Wiley Periodicals, Inc.
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