Appropriate level of cuproptosis may be involved in alleviating pulmonary fibrosis

成纤维细胞 肺纤维化 生物 纤维化 转录组 肌成纤维细胞 基因表达谱 基因表达 细胞生物学 基因 成纤维细胞生长因子 细胞 癌症研究 遗传学 细胞培养 医学 病理 受体
作者
Guoxing Li,Lihua Peng,Mingjun Wu,Yipin Zhao,Zhe Cheng,Gang Li
出处
期刊:Frontiers in Immunology [Frontiers Media]
卷期号:13 被引量:22
标识
DOI:10.3389/fimmu.2022.1039510
摘要

Objective Cuproptosis is a newly discovered form of programmed cell death that has not been studied in pulmonary fibrosis. The purpose of the present study was to explore the relationship between cuproptosis and pulmonary fibrosis. Methods Single-cell sequencing (scRNA-seq) data for human and mouse pulmonary fibrosis were obtained online from Gene Expression Omnibus (GEO) database. First, fibroblast lineage was identified and extracted using the Seurat toolkit. The pathway was then evaluated via Gene Set Enrichment Analyses (GSEA), while transcription factor activity was analyzed using DoRothEA. Next, fibroblast differentiation trajectory was inferred via Monocle software and changes in gene expression patterns during fibroblast activation were explored through gene dynamics analysis. The trajectory was then divided into three cell states in pseudotime order and the expression level of genes related to cuproptosis promotion in each cell state was evaluated, in addition to genes related to copper export and buffering and key genes in cellular metabolic pathways. Results In the mouse model of pulmonary fibrosis induced by bleomycin, the genes related to cuproptosis promotion, such as Fdx1 , Lias , Dld , Pdha1 , Pdhb , Dlat , and Lipt1 , were gradually down-regulated in the process of fibroblast differentiation from resting fibroblast to myofibroblast. Consistently, the same results were obtained via analysis of scRNA-seq data for human pulmonary fibrosis. In addition, genes related to copper ion export and buffering gradually increased with the activation of fibroblasts. Metabolism reprogramming was also observed, while fibroblast activation and tricarboxylic acid(TCA) cycle and lipid metabolism were gradually down-regulated and mitochondrial metabolism was gradually up-regulated. Conclusion The present study is the first to reveal a negative correlation between cuproptosis and fibrosis, suggesting that an appropriate cuproptosis level may be involved in inhibiting fibroblast activation. This may provide a new method for the treatment of pulmonary fibrosis.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
赵璇完成签到,获得积分10
刚刚
wanci应助ww采纳,获得10
1秒前
在水一方应助科研通管家采纳,获得10
1秒前
所所应助科研通管家采纳,获得10
1秒前
伶俐妙海应助科研通管家采纳,获得10
1秒前
dou发布了新的文献求助10
1秒前
所所应助科研通管家采纳,获得10
1秒前
1秒前
深情安青应助科研通管家采纳,获得10
1秒前
Owen应助科研通管家采纳,获得10
1秒前
CipherSage应助科研通管家采纳,获得10
1秒前
烟花应助科研通管家采纳,获得10
1秒前
白冷之发布了新的文献求助10
2秒前
酷波er应助科研通管家采纳,获得10
2秒前
端庄的盼望完成签到,获得积分10
2秒前
天天快乐应助科研通管家采纳,获得10
2秒前
CodeCraft应助乐观的雅柏采纳,获得10
2秒前
2秒前
Hello应助aoyo采纳,获得10
2秒前
伶俐妙海应助科研通管家采纳,获得10
2秒前
seedcode发布了新的文献求助10
2秒前
Akim应助科研通管家采纳,获得10
2秒前
SciGPT应助科研通管家采纳,获得10
2秒前
囧囧应助科研通管家采纳,获得200
2秒前
夔kk发布了新的文献求助10
2秒前
深情安青应助科研通管家采纳,获得10
2秒前
3秒前
CodeCraft应助科研通管家采纳,获得10
3秒前
3秒前
我是老大应助科研通管家采纳,获得10
3秒前
maggie应助科研通管家采纳,获得10
3秒前
冰冷的心发布了新的文献求助10
3秒前
今后应助科研通管家采纳,获得10
3秒前
bkagyin应助科研通管家采纳,获得10
3秒前
完美世界应助科研通管家采纳,获得10
3秒前
斯文败类应助科研通管家采纳,获得10
3秒前
务实映之完成签到 ,获得积分10
3秒前
LN发布了新的文献求助10
3秒前
orixero应助科研通管家采纳,获得10
3秒前
3秒前
高分求助中
Principles of Economics, 11th Edition 10000
University Physics with Modern Physics, 16th edition 10000
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Matrix Methods in Data Mining and Pattern Recognition 510
Social Skills Improvement System-Rating Scales--Chinese Version 500
Dynamische Polarisation von H-1 und B-11 in (CH-3)-3NBH-3 500
CLSI M07 2024 500
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 内科学 物理 复合材料 催化作用 细胞生物学 无机化学 光电子学 物理化学 电极 基因
热门帖子
关注 科研通微信公众号,转发送积分 7248505
求助须知:如何正确求助?哪些是违规求助? 8871371
关于积分的说明 18717578
捐赠科研通 6927645
什么是DOI,文献DOI怎么找? 3198390
关于科研通互助平台的介绍 2373952
邀请新用户注册赠送积分活动 2173150