Machine learning models identify ferroptosis-related genes as potential diagnostic biomarkers for Alzheimer’s disease

发病机制 疾病 神经炎症 基因 生物 生物信息学 计算生物学 医学 遗传学 免疫学 病理
作者
Yanrao Deng,Yanjin Feng,Zhicheng Lv,Jinli He,Xun Chen,Chen Wang,Mingyang Yuan,Ting Xu,Wenzhe Gao,Dongjie Chen,Hongwei Zhu,Deren Hou
出处
期刊:Frontiers in Aging Neuroscience [Frontiers Media]
卷期号:14 被引量:6
标识
DOI:10.3389/fnagi.2022.994130
摘要

Alzheimer's disease (AD) is a complex, and multifactorial neurodegenerative disease. Previous studies have revealed that oxidative stress, synaptic toxicity, autophagy, and neuroinflammation play crucial roles in the progress of AD, however, its pathogenesis is still unclear. Recent researches have indicated that ferroptosis, an iron-dependent programmed cell death, might be involved in the pathogenesis of AD. Therefore, we aim to screen correlative ferroptosis-related genes (FRGs) in the progress of AD to clarify insights into the diagnostic value. Interestingly, we identified eight FRGs were significantly differentially expressed in AD patients. 10,044 differentially expressed genes (DEGs) were finally identified by differential expression analysis. The following step was investigating the function of DEGs using gene set enrichment analysis (GSEA). Weight gene correlation analysis was performed to explore ten modules and 104 hub genes. Subsequently, based on machine learning algorithms, we constructed diagnostic classifiers to select characteristic genes. Through the multivariable logistic regression analysis, five features (RAF1, NFKBIA, MOV10L1, IQGAP1, FOXO1) were then validated, which composed a diagnostic model of AD. Thus, our findings not only developed genetic diagnostics strategy, but set a direction for further study of the disease pathogenesis and therapy targets.

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