Python(编程语言)
蒙特卡罗方法
从头算
计算机科学
统计物理学
计算科学
混合蒙特卡罗
工作流程
蒙特卡罗分子模拟
动态蒙特卡罗方法
而量子蒙特卡罗
马尔科夫蒙特卡洛
从头算量子化学方法
动力学蒙特卡罗方法
软件
统计物理中的蒙特卡罗方法
二面角
物理
算法
蒙特卡罗算法
作者
Woodrow N. Wilson,Vivek S. Bharadwaj,Neeraj Rai
标识
DOI:10.1021/acs.jctc.5c01148
摘要
There is a growing need in the simulation community for software that provides a transparent, reproducible, usable, and extensible (TRUE) Monte Carlo (MC) simulation framework employing energies from ab initio methods and machine-learning interatomic potentials (MLIPs). We introduce a Python library (ASE-MC) that adds Monte Carlo functionality to the Atomic Simulation Environment (ASE) package. Now, we can combine the powerful tools used to build systems and perform ab initio and MLIP in ASE with MC simulation algorithms to sample the configurational space with a concise Python script. After presenting the design philosophy, we demonstrate the flexibility of our approach using selected examples. These example simulations include liquid water described with a message-passing MLIP in the canonical and isothermal-isobaric ensembles, sampling the characteristic dihedral angle of biphenyl and comparing an MLIP to first-principles calculations, and a grand canonical Monte Carlo simulation of ammonia adsorption on Pt(111). These examples showcase the main features of the software, which include flexibility in the choice of ab initio or MLIP engine, ab initio or MLIP grand canonical MC with cavity bias insertions and deletions, the ability to add custom MC moves to the move set, and how users can condense complex MC workflows into a single Python script. This library serves as a framework for reproducible Monte Carlo simulations, facilitating easy reproduction of the work and application to new systems.
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