Abstract Mixed matrix membranes (MMMs), combining the processability of polymers with the separation performance of fillers, have attracted significant attention for industrial gas separations. Nevertheless, achieving a uniformly distributed, highly connected filler phase remains a major obstacle, limiting the separation performance enhancement of MMMs. Herein, we report a family of preformed covalent organic framework (COF) network‐based MMMs, which are fabricated by preforming a continuous COF network followed by infiltration of a polyimide matrix. This preforming‐filler‐network (PFN) method constructs a three‐dimensional (3D) interconnected transport scaffold within the membrane. This unique structure eliminates filler agglomeration, a key challenge that has not been resolved by conventional MMM fabrication methods. Consequently, the membranes achieve a 707.7% enhancement in H 2 permeability (to 366.7 Barrer) and a 121.7% increase in H 2 /CH 4 separation factor (to 100.2) compared to pristine polyimide membranes. The COF‐network MMM also exhibits excellent stability and plasticization resistance, further highlighting its potential for real‐world hydrogen purification.