Efficient methods for finding transition states in chemical reactions: Comparison of improved dimer method and partitioned rational function optimization method

插值(计算机图形学) 鞍点 Lanczos重采样 功能(生物学) 数学 统计物理学 数学优化 计算化学 算法 物理 量子力学 化学 几何学 经典力学 运动(物理) 生物 进化生物学 特征向量
作者
Andreas Heyden,Alexis T. Bell,Frerich J. Keil
出处
期刊:Journal of Chemical Physics [American Institute of Physics]
卷期号:123 (22): 224101-224101 被引量:988
标识
DOI:10.1063/1.2104507
摘要

A combination of interpolation methods and local saddle-point search algorithms is probably the most efficient way of finding transition states in chemical reactions. Interpolation methods such as the growing-string method and the nudged-elastic band are able to find an approximation to the minimum-energy pathway and thereby provide a good initial guess for a transition state and imaginary mode connecting both reactant and product states. Since interpolation methods employ usually just a small number of configurations and converge slowly close to the minimum-energy pathway, local methods such as partitioned rational function optimization methods using either exact or approximate Hessians or minimum-mode-following methods such as the dimer or the Lanczos method have to be used to converge to the transition state. A modification to the original dimer method proposed by [Henkelman and Jonnson J. Chem. Phys. 111, 7010 (1999)] is presented, reducing the number of gradient calculations per cycle from six to four gradients or three gradients and one energy, and significantly improves the overall performance of the algorithm on quantum-chemical potential-energy surfaces, where forces are subject to numerical noise. A comparison is made between the dimer methods and the well-established partitioned rational function optimization methods for finding transition states after the use of interpolation methods. Results for 24 different small- to medium-sized chemical reactions covering a wide range of structural types demonstrate that the improved dimer method is an efficient alternative saddle-point search algorithm on medium-sized to large systems and is often even able to find transition states when partitioned rational function optimization methods fail to converge.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
1秒前
大模型应助鲤鱼平安采纳,获得10
1秒前
EBD发布了新的文献求助10
1秒前
1秒前
收长头发辫子完成签到,获得积分10
1秒前
Sally1127完成签到,获得积分10
2秒前
2秒前
3秒前
3秒前
3秒前
平常诗桃完成签到,获得积分10
4秒前
CipherSage应助冷艳的寒天采纳,获得10
5秒前
桑稚完成签到 ,获得积分10
5秒前
谦让涵山发布了新的文献求助10
5秒前
6秒前
6秒前
橘橙色发布了新的文献求助10
6秒前
7秒前
7秒前
不发natural不改名完成签到,获得积分10
7秒前
眰晌完成签到 ,获得积分10
8秒前
Marvin发布了新的文献求助10
8秒前
8秒前
9秒前
9秒前
煲珠公发布了新的文献求助10
10秒前
科研通AI6.4应助可靠盼旋采纳,获得10
10秒前
10秒前
鬼灭之刃发布了新的文献求助10
10秒前
10秒前
11秒前
细心幻香发布了新的文献求助10
12秒前
研友_Ze2V48完成签到,获得积分10
12秒前
13秒前
ZixuanZhang发布了新的文献求助10
13秒前
13秒前
要减肥发布了新的文献求助10
15秒前
15秒前
16秒前
英吉利25发布了新的文献求助10
16秒前
高分求助中
Principles of Economics, 11th Edition 10000
University Physics with Modern Physics, 16th edition 10000
(应助此贴封号)【重要!!请各用户(尤其是新用户)详细阅读】【科研通的精品贴汇总】 10000
Environmental Leverage in Times of Climate Crisis: Product Standards, Carbon Border Measures and Preferential Trade Agreements 1000
Matrix Methods in Data Mining and Pattern Recognition 510
Social Skills Improvement System-Rating Scales--Chinese Version 500
Dynamische Polarisation von H-1 und B-11 in (CH-3)-3NBH-3 500
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 内科学 物理 复合材料 催化作用 细胞生物学 无机化学 光电子学 物理化学 电极 基因
热门帖子
关注 科研通微信公众号,转发送积分 7218668
求助须知:如何正确求助?哪些是违规求助? 8849454
关于积分的说明 18674882
捐赠科研通 6875712
什么是DOI,文献DOI怎么找? 3186049
关于科研通互助平台的介绍 2348711
邀请新用户注册赠送积分活动 2160172