Carbonicoccus gen. nov., Carbonicoccus zhangzhihongae sp. nov. and Carbonicoccus niuqiaonis sp. nov., novel taxa assignable to the family Propionibacteriaceae and derived from the coal mine dust samples in Shanxi Province of China

生物 16S核糖体RNA 拉伤 系统发育树 细菌 基因 氨基酸 甘氨酸 半乳糖 核糖体RNA 系统发育学 微生物学 琼脂平板 琼脂 脂肪酸 序列分析 分类学(生物学) 谷氨酸 细胞壁 基因组DNA 缬氨酸 食品科学 分类单元 遗传学
作者
Taoyu Yan,Caixin Yang,Zhiming Kang,Ji Pu,Zixin Weng,Mei Zhang,Tao Liu,Fangyu Gao,Lijun Zhao,Junyao Xie,Xiaojuan Du,Han Zheng,Jianguo Xu,Kui Dong
出处
期刊:International Journal of Systematic and Evolutionary Microbiology [Microbiology Society]
卷期号:76 (2) 被引量:1
标识
DOI:10.1099/ijsem.0.007070
摘要

Four Gram-positive, aerobic, non-motile cocci-shaped bacteria were isolated from the coal mine dust samples collected in Yuncheng City, Shanxi Province, and subjected to polyphasic taxonomic characterization. Whole-genome sequencing revealed that genomic sizes ranged from 3.7 to 4.2 Mb, with G+C contents of 67.0–69.5 mol%. Comparative analysis of 16S rRNA gene sequences revealed that strains Y1685 T , Y1700, Y2011 T and Y2014 shared the highest similarity (95.12–95.33%) with Enemella dayhoffiae NML 130396 T . Phylogenetic analysis based on 16S rRNA gene sequences and 552 core genes consistently placed the 4 strains within a distinct clade, separate from recognized genera in the family Propionibacteriaceae . The strains Y1685 T , Y1700, Y2011 T and Y2014 exhibited optimal growth on brain heart infusion agar supplemented with 5% defibrinated sheep blood medium at 30 °C, forming convex, opaque, smooth colonies with spherical cells. All strains were oxidase-negative and catalase-positive. MK-9 (H 4 ) was the sole menaquinone in type strains Y1685 T and Y2011 T . The major fatty acids of strain Y1685 T were iso-C 15 : 0 , anteiso-C 15 : 0 and iso-C 16 : 0 , while the major fatty acids of strain Y2011 T were iso-C 15 : 0 and anteiso-C 15 : 0 . The cell-wall sugars of strain Y1685 T were ribose and rhamnose, and the cell-wall amino acids were alanine, glutamic acid, glycine and ll -diaminopimelic acid. In contrast, strain Y2011 T contained arabinose, glucose and galactose as cell wall sugars, with alanine, glutamic acid and glycine as the principal amino acids. Genomic and phenotypic data collectively support the classification of these isolates as representing two novel species within a new genus of the family Propionibacteriaceae . We proposed the genus Carbonicoccus gen. nov., with the type species Carbonicoccus zhangzhihongae sp. nov. (type strain Y1685 T =KCTC 59535 T =GDMCC 1.5547 T ) and Carbonicoccus niuqiaonis sp. nov. (type strain Y2011 T =KCTC 59536 T =GDMCC 1.5548 T ).

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