Generator of Neural Network Potential for Molecular Dynamics: Constructing Robust and Accurate Potentials with Active Learning for Nanosecond-Scale Simulations

纳秒 分子动力学 计算机科学 发电机(电路理论) 比例(比率) 动力学(音乐) 人工神经网络 人工智能 统计物理学 生物系统 物理 化学 计算化学 激光器 生物 热力学 量子力学 光学 声学 功率(物理)
作者
Naoki Matsumura,Yuta Yoshimoto,Tamio Yamazaki,Tomohito Amano,Tomoyuki Noda,Naoki Ebata,Takatoshi Kasano,Yasufumi Sakai
出处
期刊:Journal of Chemical Theory and Computation [American Chemical Society]
卷期号:21 (8): 3832-3846 被引量:8
标识
DOI:10.1021/acs.jctc.4c01613
摘要

Neural network potentials (NNPs) enable large-scale molecular dynamics (MD) simulations of systems containing >10,000 atoms with the accuracy comparable to ab initio methods and play a crucial role in material studies. Although NNPs are valuable for short-duration MD simulations, maintaining the stability of long-duration MD simulations remains challenging due to the uncharted regions of the potential energy surface (PES). Currently, there is no effective methodology to address this issue. To overcome this challenge, we developed an automatic generator of robust and accurate NNPs based on an active learning (AL) framework. This generator provides a fully integrated solution encompassing initial data set creation, NNP training, evaluation, sampling of additional structures, screening, and labeling. Crucially, our approach uses a sampling strategy that focuses on generating unstable structures with short interatomic distances, combined with a screening strategy that efficiently samples these configurations based on interatomic distances and structural features. This approach greatly enhances the MD simulation stability, enabling nanosecond-scale simulations. We evaluated the performance of our NNP generator in terms of its MD simulation stability and physical properties by applying it to liquid propylene glycol (PG) and polyethylene glycol (PEG). The generated NNPs enable stable MD simulations of systems with >10,000 atoms for 20 ns. The predicted physical properties, such as the density and self-diffusion coefficient, show excellent agreement with the experimental values. This work represents a remarkable advance in the generation of robust and accurate NNPs for organic materials, paving the way for long-duration MD simulations of complex systems.
最长约 10秒,即可获得该文献文件

科研通智能强力驱动
Strongly Powered by AbleSci AI
科研通是完全免费的文献互助平台,具备全网最快的应助速度,最高的求助完成率。 对每一个文献求助,科研通都将尽心尽力,给求助人一个满意的交代。
实时播报
2秒前
Mmmm发布了新的文献求助10
4秒前
雨霧雲完成签到,获得积分10
7秒前
ad发布了新的文献求助10
8秒前
8秒前
9秒前
研友_ndPgjn应助江瑟瑟采纳,获得30
10秒前
lucaswen完成签到,获得积分10
11秒前
11秒前
12秒前
12秒前
英俊的铭应助韩小炜采纳,获得10
12秒前
NEX完成签到,获得积分20
13秒前
龍Ryu完成签到,获得积分10
14秒前
科研通AI6.2应助蓝天采纳,获得10
14秒前
大个应助铁布衫金钟罩采纳,获得10
15秒前
16秒前
周美言完成签到,获得积分10
16秒前
顶顶顶发布了新的文献求助10
17秒前
beibei发布了新的文献求助10
17秒前
Ddd完成签到,获得积分10
17秒前
123完成签到,获得积分10
18秒前
科研通AI6.3应助柯亦云采纳,获得10
18秒前
雨齐完成签到,获得积分10
19秒前
爆米花应助纤维素纳米晶采纳,获得10
19秒前
宁天完成签到,获得积分20
20秒前
Wang完成签到 ,获得积分10
21秒前
科研通AI6.3应助starry采纳,获得10
21秒前
充电宝应助小小作精怪采纳,获得10
21秒前
多看文献发布了新的文献求助10
21秒前
子车立轩完成签到 ,获得积分10
22秒前
23秒前
DD完成签到 ,获得积分10
24秒前
25秒前
Xyy应助徐师傅采纳,获得10
25秒前
柯亦云发布了新的文献求助10
28秒前
30秒前
moemoney完成签到,获得积分10
31秒前
冷静夜蕾完成签到,获得积分10
31秒前
Jasper应助柠檬的锦程采纳,获得10
31秒前
高分求助中
GL 2 A method for assessing the in-place cleanability of food processing equipment, Fourth Edition, December 2023 3000
Annie Ernaux: De la perte au corps glorieux 600
Developing Solid Oral Dosage Forms Pharmaceutical Theory and Practice (3rd Edition) 500
Writing Systems 500
类器官构建与应用:从基础到前沿 500
Thermodynamics of Natural Systems 400
Electric Vehicle Powertrains Design Fundamentals, Components, and Applications 400
热门求助领域 (近24小时)
化学 材料科学 医学 生物 纳米技术 工程类 有机化学 化学工程 生物化学 计算机科学 物理 内科学 复合材料 催化作用 物理化学 光电子学 电极 细胞生物学 基因 无机化学
热门帖子
关注 科研通微信公众号,转发送积分 6811719
求助须知:如何正确求助?哪些是违规求助? 8527458
关于积分的说明 18152851
捐赠科研通 6138263
什么是DOI,文献DOI怎么找? 3030040
邀请新用户注册赠送积分活动 2006667
关于科研通互助平台的介绍 2005502