Microplastics are ubiquitous in the aquatic environment. However, the occurrence of microplastics in farmed fish is under-researched. Herein, microplastic abundance in the stomach and intestine of marine-cultured hybrid groupers (Epinephelus fuscoguttatus × Epinephelus lanceolatus) in the Pearl River Estuary (PRE) was examined. Microplastics were detected in all fish samples, with an average abundance of 35.36 n/individual or 0.62 n/g. The fish intestine contained more microplastics (23.91 n/individual, i.e., 1.10 n/g) than the stomach (12.80 n/individual, i.e., 0.37 n/g). In addition, the ingested microplastics were predominantly fibre-shaped (70.1%), and nearly 70% were smaller than 1 mm in diameter. Potential factors affecting the ingestion of microplastics by farmed hybrid groupers include fish diet and the availability of microplastics in their feeding habitat.