By expounding the rise and characteristics of Governance by Collaborative Network, this paper analyzes the obstacles our government has on the way of carrying forward Governance by Collaborative Network, such as the over-intervention and manipulation of government, the under-developed society lacking of an ability and conscious of self-governance and self-service and about the operation problems of non-profit organization, and it also analyzes that the underlying reasons of these problems are the immaturity of our civil society, the serious unbalance of the development of the network node resulted from the not complete government transition, and Governance by Collaborative Network is lack of the trust and cooperation mechanism. Combined with the case of “three center” construction in Dongcheng District of Beijing City, this paper proposes that efficient governance by collaborative network lies in fostering law ruling concept, perfecting institutional construction, reinforcing the cultivation of the civil society, speeding up the functional transformation of government, and building and improving the network