Virgifigura deserti gen. nov., sp. nov., isolated from the Gurbantunggut Desert soil

生物 16S核糖体RNA 拉伤 细菌 系统发育树 基因 氧化酶试验 微生物学 植物 遗传学 生物化学 解剖
作者
Qi Li,Zi-Qi Peng,Wen‐ling Liu,Zhen‐Hao Luo,Shuai Li,Wen‐Jun Li,Lei Dong
出处
期刊:International Journal of Systematic and Evolutionary Microbiology [Microbiology Society]
卷期号:75 (4)
标识
DOI:10.1099/ijsem.0.006771
摘要

A Gram-stain-negative, aerobic, rod-shaped bacterial strain, SYSU D60014 T , was isolated from a sandy soil sample collected from the Gurbantunggut Desert in Xinjiang, PR China. Colonies of SYSU D60014 T were pink-coloured, crystalline, irregular edge with a rough surface. Phylogenetic analyses based on both the 16S rRNA gene and whole-genome sequences assigned strain SYSU D60014 T belonged to the family Rhodospirillaceae , formed a distinct lineage and showed 92.5–91.0% similarity to closely related strains. Digital DNA–DNA hybridization, average nucleotide identity and average amino acid identity values between strain SYSU D60014 T and members of its related species were 17.2–19.6%, 70.8–74.4% and 48.9–64.5%, respectively. The complete genome of strain SYSU D60014 T was 5,100,926 bp with a DNA G+C content of 65.1%. Cells were oxidase-positive and catalase-negative. The strain could grow at 28–40 °C (optimum, 37 °C), pH 5.0–8.0 (optimum, pH 7.0), and in the presence of up to 3% NaCl (optimum, 1–1.5%, w/v) on R2A. The predominant menaquinone was Q-10. The main polar lipids were phosphatidylethanolamine, phosphatidylmethyl ethanolamine, diphosphatidylglycerol, unidentified aminophospholipid, unidentified aminolipid, unidentified phospholipid, four unidentified polar lipids and two unidentified phosphoglycolipids. Major cellular fatty acids were C 19 : 0 cyclo ω 8 c , summed feature 8 (C 18 : 1 ω7 c and/or C 18 : 1 ω6 c) and C 16 : 0 . Based on the results obtained through genotypic and phenotypic analyses, we propose that strain SYSU D60014 T represents a novel species and genus within the family Rhodospirillaceae , for which we propose the name Virgifigura deserti gen. nov., sp. nov. (type strain SYSU D60014 T =NBRC 112951 T =CPCC 101030 T ).

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